RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SPACA1Q9HBV2 294 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 GP6Q9HCN6 339 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 IGKV3D-15A0A087WSY6 115 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 DNM1P46Q6ZS02 220 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 C1QL2Q7Z5L3 287 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 MYPOPQ86VE0 399 aaPredicted RBP8.78□□□□□ -1
COL6A3-205ENST00000392004 CALHM1Q8IU99 346 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 ZNF695Q8IW36 515 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 OR5AP2Q8NGF4 316 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 RAB39BQ96DA2 213 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 PSG11Q9UQ72 335 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 HILPDAQ9Y5L2 63 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 A0A1B0GTI1 187 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 C1QL1O75973 258 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 IFNA17P01571 189 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 DAOP14920 347 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 HRH1P35367 487 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 FAM216BQ8N7L0 139 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 OR8B3Q8NGG8 313 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 OR8B2Q96RD0 313 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 ZNF2Q9BSG1 426 aaPredicted RBP8.77□□□□□ -1
COL6A3-205ENST00000392004 RPS10P5Q9NQ39 176 aa8.77□□□□□ -1
COL6A3-205ENST00000392004 TRBV5-7A0A0A0MS05 114 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 J3QT63 122 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 AGPAT2O15120 278 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 CHRM2P08172 466 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 PRDX2P32119 198 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 RPS16P62249 146 aaKnown RBP8.77□□□□□ -1.01
COL6A3-205ENST00000392004 PPP1R1AQ13522 171 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 OR5A2Q8NGI9 324 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 BBC3Q96PG8 261 aaPredicted RBP8.77□□□□□ -1.01
COL6A3-205ENST00000392004 GPHA2Q96T91 129 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 RHOFQ9HBH0 211 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 YLPM1P49750 1951 aaKnown RBP8.77□□□□□ -1.01
COL6A3-205ENST00000392004 BTBD17A6NE02 478 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 ACAA1P09110 424 aaPredicted RBP8.77□□□□□ -1.01
COL6A3-205ENST00000392004 SELLP14151 372 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 COL10A1Q03692 680 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 IGFL2Q6UWQ7 119 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 OR14K1Q8NGZ2 314 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 DUX5Q96PT3 197 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 G6PC2Q9NQR9 355 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 SLC25A15Q9Y619 301 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 B9A039 149 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 MELTFP08582 738 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 OR5H8P0DN80 308 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 ROM1Q03395 351 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 SP6Q3SY56 376 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 SCGB3A2Q96PL1 93 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 DCTN5Q9BTE1 182 aa8.77□□□□□ -1.01
COL6A3-205ENST00000392004 SLC25A10Q9UBX3 287 aaPredicted RBP8.77□□□□□ -1.01
COL6A3-205ENST00000392004 C9orf170A2RU37 121 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 VSIG8P0DPA2 414 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 ADCYAP1P18509 176 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 KIRREL1Q96J84 757 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 SULT4A1Q9BR01 284 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 LSM5Q9Y4Y9 91 aaKnown RBP8.76□□□□□ -1.01
COL6A3-205ENST00000392004 M0R036 132 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 FGF16O43320 207 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 MED6O75586 246 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 CEACAM6P40199 344 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 GPR12P47775 334 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 PPT1P50897 306 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 TAS2R31P59538 309 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 ERVK-16P61578 105 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 BTNL3Q6UXE8 466 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 SLC25A42Q86VD7 318 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 SGPP2Q8IWX5 399 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF561Q8N587 486 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 RPS4Y2Q8TD47 263 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 FAM168AQ92567 244 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 GSN-AS1Q9NRJ2 163 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 F8P00451 2351 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 RNASEK-C17orf49H0YIS7 233 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 SCGNO76038 276 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 CAV2P51636 162 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 CEACAM21Q3KPI0 293 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 RNF212Q495C1 297 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF843Q8N446 348 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 NABP1Q96AH0 204 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 GALMQ96C23 342 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 NRIP2Q9BQI9 281 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 WIPI2Q9Y4P8 454 aa8.76□□□□□ -1.01
COL6A3-205ENST00000392004 A0A1W2PPH5 198 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 SFTA3P0C7M3 94 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF728P0DKX0 622 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 RCC1P18754 421 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-205ENST00000392004 P2RY4P51582 365 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 SEM1Q6ZVN7 128 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 C15orf54Q8N8G6 183 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ZDHHC22Q8N966 263 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 MITD1Q8WV92 249 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 VSIG4Q9Y279 399 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 A0A1B0GV50 99 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 M0R1X1 148 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 KCNAB3O43448 404 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 BPNT1O95861 308 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ZBTB25P24278 435 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 SRSF3P84103 164 aaKnown RBP8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF816Q0VGE8 651 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms