RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TUBGCP6Q96RT7 1819 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 PAPPAQ13219 1627 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 MDP1Q86V88 176 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 TMSB15BA0A087X1C1 80 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 GAPDHP04406 335 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNFX1Q9P2E3 1918 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF738Q8NE65 137 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 PRDM14Q9GZV8 571 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 RAB33BQ9H082 229 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 FAM60AQ9NP50 221 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 IFNL4K9M1U5 179 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 PNLIPP16233 465 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 LILRA6Q6PI73 481 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 MRPL24Q96A35 216 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 RPP25Q9BUL9 199 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 SCNM1Q9BWG6 230 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 ACAA1P09110 424 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 DRD3P35462 400 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 FAM3BP58499 235 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 SHISA5Q8N114 240 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 OR10AC1Q8NH08 325 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 VN1R17PQ8TDU5 208 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 FSCN3Q9NQT6 498 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 TRPM3Q9HCF6 1732 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 FAM181BA6NEQ2 426 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 CEACAM18A8MTB9 384 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 HOXB3P14651 431 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 PRDX2P32119 198 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 MC5RP33032 325 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 PRSS12P56730 875 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 KLF9Q13886 244 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 PRSS8Q16651 343 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF658BQ4V348 819 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 NEURL2Q9BR09 285 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 DIRC3C9JPN6 131 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 HYAL3O43820 417 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 ABHD14BQ96IU4 210 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 NPVFQ9HCQ7 196 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 YBX2Q9Y2T7 364 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 CD74P04233 296 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 MMP9P14780 707 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 CIRBPQ14011 172 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 GUCA2BQ16661 112 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 ISXQ2M1V0 245 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 GAB4Q2WGN9 574 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 ERASQ7Z444 233 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 LPAR2Q9HBW0 351 aa11.17□□□□□ -0.62
CCDC88C-204ENST00000389857 A8MWL6 223 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 CCL3P10147 92 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 LAMTOR1Q6IAA8 161 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 SLC16A13Q7RTY0 426 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 OR1K1Q8NGR3 316 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 MRAP2Q96G30 205 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 ABCA3Q99758 1704 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 GPA33Q99795 319 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 KIAA1551Q9HCM1 1747 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 ADAMTS7Q9UKP4 1686 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 BGLAPP02818 100 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 TCTAP57738 103 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 LYZL2Q7Z4W2 148 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 NUP37Q8NFH4 326 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 H1FOOQ8IZA3 346 aaPredicted RBP11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 SMDT1Q9H4I9 107 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 RCC2Q9P258 522 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 GCSAMQ8N6F7 178 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 DDB2Q92466 427 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 ISOC2Q96AB3 205 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 FLRT3Q9NZU0 649 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 BCORQ6W2J9 1755 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 MYO16Q9Y6X6 1858 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 SCN1AP35498 2009 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 IGHV3-21A0A0B4J1V1 117 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 SEC11BP0C7V7 166 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 PAM16Q9Y3D7 125 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 ZFP36L2P47974 494 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 RBM11P57052 281 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 PSG9Q00887 426 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF645Q8N7E2 425 aa11.16□□□□□ -0.62
CCDC88C-204ENST00000389857 STRCQ7RTU9 1775 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 LEUTXA8MZ59 168 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 PLAURQ03405 335 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 KRTCAP3Q53RY4 240 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 RNF133Q8WVZ7 376 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 PIMREGQ9BSJ6 248 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 CLDN14O95500 239 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 NUDT3O95989 172 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF345Q14585 488 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF383Q8NA42 475 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 LRRC3BQ96PB8 259 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 DUSP15Q9H1R2 295 aaPredicted RBP11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 C7orf77A4D0Y5 90 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 REG1BP48304 166 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 HOGA1Q86XE5 327 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 ADRA2AP08913 450 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 NUBP1P53384 320 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 SERF2P84101 59 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 DNLZQ5SXM8 178 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 TTTY12Q9BZ98 90 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 RAXQ9Y2V3 346 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms