RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 OR10AD1Q8NGE0 317 aa10.89□□□□□ -0.67
CLK3-201ENST00000345005 SECTM1Q8WVN6 248 aa10.89□□□□□ -0.67
CLK3-201ENST00000345005 OR51I2Q9H344 312 aa10.89□□□□□ -0.67
CLK3-201ENST00000345005 NECAP2Q9NVZ3 263 aa10.89□□□□□ -0.67
CLK3-201ENST00000345005 MTCH1Q9NZJ7 389 aa10.89□□□□□ -0.67
CLK3-201ENST00000345005 PIGBOS1A0A0B4J2F0 54 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 TMEM8BA6NDV4 472 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 UMAD1C9J7I0 102 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 J3QT63 122 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 KITLGP21583 273 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 DUSP1P28562 367 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 MPV17P39210 176 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 ZNF83P51522 516 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 OR8G1Q15617 311 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 AWAT1Q58HT5 328 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 MBNL2Q5VZF2 373 aaKnown RBP10.88□□□□□ -0.67
CLK3-201ENST00000345005 TMEM211Q6ICI0 200 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 RNASE11Q8TAA1 199 aaKnown RBP10.88□□□□□ -0.67
CLK3-201ENST00000345005 ZNF2Q9BSG1 426 aaPredicted RBP10.88□□□□□ -0.67
CLK3-201ENST00000345005 EIF5A2Q9GZV4 153 aaKnown RBP10.88□□□□□ -0.67
CLK3-201ENST00000345005 C19orf12Q9NSK7 152 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 PCNX1Q96RV3 2341 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.88□□□□□ -0.67
CLK3-201ENST00000345005 LRP5LA4QPB2 252 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 TMEM210A6NLX4 147 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 H7C1Q1 480 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 M0R1B8 84 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 AGPAT2O15120 278 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 SYNGR1O43759 233 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 CRYAAP02489 173 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 SNRNP70P08621 437 aaKnown RBP10.88□□□□□ -0.67
CLK3-201ENST00000345005 OR8U9P0C7N5 309 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 PI3P19957 117 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 GPX4P36969 197 aaPredicted RBP10.88□□□□□ -0.67
CLK3-201ENST00000345005 UCP3P55916 312 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 FAM27E3Q08E93 113 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 FABP9Q0Z7S8 132 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 MPV17LQ2QL34 196 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 ALKBH6Q3KRA9 238 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 ABCA11PQ4W5N1 156 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 MIDNQ504T8 468 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 LINC00596Q86U02 117 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 LGI3Q8N145 548 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 CCDC71LQ8N9Z2 235 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 OR8U1Q8NH10 309 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 ABHD14BQ96IU4 210 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 NAA60Q9H7X0 242 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 SPACA1Q9HBV2 294 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 AK3Q9UIJ7 227 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 ANXA10Q9UJ72 324 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 SH3BGRL2Q9UJC5 107 aa10.88□□□□□ -0.67
CLK3-201ENST00000345005 SPENQ96T58 3664 aaKnown RBP10.87□□□□□ -0.67
CLK3-201ENST00000345005 A0A1B0GWJ7 208 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 SDCBPO00560 298 aaPredicted RBP10.87□□□□□ -0.67
CLK3-201ENST00000345005 ST8SIA3O43173 380 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 TIMM8AO60220 97 aaPredicted RBP10.87□□□□□ -0.67
CLK3-201ENST00000345005 CLN5O75503 358 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 OR7C1O76099 320 aaPredicted RBP10.87□□□□□ -0.67
CLK3-201ENST00000345005 SFTPCP11686 197 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 CASP6P55212 293 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 CLINT1Q14677 625 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 GNMTQ14749 295 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 OR2B11Q5JQS5 317 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 SSX8Q7RTT4 187 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 Q8IYB0 196 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 ARL6IP6Q8N6S5 226 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 RND1Q92730 232 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 VKORC1Q9BQB6 163 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 ZNF701Q9NV72 531 aaPredicted RBP10.87□□□□□ -0.67
CLK3-201ENST00000345005 JKAMPQ9P055 326 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 POLDIP2Q9Y2S7 368 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 TMED3Q9Y3Q3 217 aa10.87□□□□□ -0.67
CLK3-201ENST00000345005 LSM5Q9Y4Y9 91 aaKnown RBP10.87□□□□□ -0.67
CLK3-201ENST00000345005 SMG1Q96Q15 3661 aaKnown RBP10.87□□□□□ -0.67
CLK3-201ENST00000345005 CXorf65A6NEN9 183 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 C16orf97H3BN30 126 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 PRH1P02810 166 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 ZNF728P0DKX0 622 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 OR5H8P0DN80 308 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 SELLP14151 372 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 SULT1A1P50225 295 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 FABP6P51161 128 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 SPCS3P61009 180 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 ZNF616Q08AN1 781 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 ZNF266Q14584 549 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 KRBOX4Q5JUW0 171 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 ALKBH2Q6NS38 261 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 FOXRED2Q8IWF2 684 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 FAM185AQ8N0U4 392 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 FAM58AQ8N1B3 248 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 SCCPDHQ8NBX0 429 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 SHANK1Q9Y566 2161 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 A0A087WWC5 75 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 C9JQL5 133 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 HSPA12AO43301 675 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 TGOLN2O43493 480 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 LMO1P25800 156 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 TAS2R60P59551 318 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 SOHLH1Q5JUK2 328 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 LIAT1Q6ZQX7 453 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms