RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 TMEM222Q9H0R3 208 aa14.19□□□□□ -0.14
CPSF4-201ENST00000292476 ESRP2Q9H6T0 727 aaKnown RBP14.19□□□□□ -0.14
CPSF4-201ENST00000292476 TMEM56-RWDD3S4R434 201 aa14.19□□□□□ -0.14
CPSF4-201ENST00000292476 FAM221AA4D161 298 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 NUPL2O15504 423 aaKnown RBP14.18□□□□□ -0.14
CPSF4-201ENST00000292476 TK1P04183 234 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 CD5P06127 495 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 RCC1P18754 421 aaPredicted RBP14.18□□□□□ -0.14
CPSF4-201ENST00000292476 BCL3P20749 454 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 NPBWR2P48146 333 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 KCNJ3P48549 501 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 HMGN3Q15651 99 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 GUCA2BQ16661 112 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 SP6Q3SY56 376 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 CA5BP1Q8WTZ4 195 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 HRH4Q9H3N8 390 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 MTCH1Q9NZJ7 389 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 DUSP13Q9UII6 198 aa14.18□□□□□ -0.14
CPSF4-201ENST00000292476 IGLV3-9A0A075B6K5 115 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 C3orf85A0A1B0GTC6 90 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 A1L4Q6 167 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 TRDCB7Z8K6 153 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 ATP6V1G2-DDX39BF2Z307 99 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 PHF1O43189 567 aaPredicted RBP14.17□□□□□ -0.14
CPSF4-201ENST00000292476 TUSC2O75896 110 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 SCGB1D2O95969 90 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 HEXAP06865 529 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 MUC1P15941 1255 aaPredicted RBP14.17□□□□□ -0.14
CPSF4-201ENST00000292476 SWI5Q1ZZU3 235 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 ALKBH6Q3KRA9 238 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 BRICD5Q6PL45 260 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 FIP1L1Q6UN15 594 aaKnown RBP14.17□□□□□ -0.14
CPSF4-201ENST00000292476 KCNJ16Q9NPI9 418 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 STRAPQ9Y3F4 350 aaKnown RBP14.17□□□□□ -0.14
CPSF4-201ENST00000292476 PCNX1Q96RV3 2341 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 RNASEK-C17orf49H0YIS7 233 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 SIGLEC5O15389 551 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 SPP1P10451 314 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 AKR1C2P52895 323 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 DVL1P1P54792 670 aaPredicted RBP14.17□□□□□ -0.14
CPSF4-201ENST00000292476 SRSF3P84103 164 aaKnown RBP14.17□□□□□ -0.14
CPSF4-201ENST00000292476 AKR1C1Q04828 323 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 ZNF154Q13106 437 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 GNMTQ14749 295 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 FAM219AQ8IW50 185 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 FAM58AQ8N1B3 248 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 SCCPDHQ8NBX0 429 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 TMEM171Q8WVE6 324 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 IL22RA2Q969J5 263 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 TLNRD1Q9H1K6 362 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 IFT22Q9H7X7 185 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 ATP23Q9Y6H3 246 aa14.17□□□□□ -0.14
CPSF4-201ENST00000292476 ICE1Q9Y2F5 2266 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 SYNGR1O43759 233 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 THBDP07204 575 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 WNT2P09544 360 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 DANCRP0C864 163 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 MMP9P14780 707 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 Q6ZRG5 221 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 SLC35G3Q8N808 338 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 ZNF565Q8N9K5 539 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 ERGIC1Q969X5 290 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 WFIKKN1Q96NZ8 548 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 PSMG3-AS1Q96PY0 264 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 TP53RKQ96S44 253 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 C11orf1Q9H5F2 150 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 FZR1Q9UM11 496 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 PTPN13Q12923 2485 aa14.16□□□□□ -0.14
CPSF4-201ENST00000292476 SPTAN1Q13813 2472 aaKnown RBP14.15□□□□□ -0.14
CPSF4-201ENST00000292476 MLNRO43193 412 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 PVALBP20472 110 aaPredicted RBP14.15□□□□□ -0.14
CPSF4-201ENST00000292476 GNRHRP30968 328 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 ARHGDIBP52566 201 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 ADORA2A-AS1P86434 159 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 IGSF11Q5DX21 431 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 C22orf34Q6ZV56 151 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 DMBX1Q8NFW5 382 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 OR11L1Q8NGX0 322 aa14.15□□□□□ -0.14
CPSF4-201ENST00000292476 SPTBN1Q01082 2364 aaKnown RBP14.15□□□□□ -0.14
CPSF4-201ENST00000292476 DPRXA6NFQ7 191 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 FAM90A27PA6NNH2 459 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 H7C2Y5 167 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 TSPAN9O75954 239 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 GRPP07492 148 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 PGA5P0DJD9 388 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 PRKACAP17612 351 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 CD200P41217 278 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 BSPH1Q075Z2 132 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 HFEQ30201 348 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 OR52M1Q8NGK5 317 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 PLA2G2EQ9NZK7 142 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 ZDHHC8Q9ULC8 765 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 PRELID1Q9Y255 219 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 RCL1Q9Y2P8 373 aaKnown RBP14.14□□□□□ -0.15
CPSF4-201ENST00000292476 KPTNQ9Y664 436 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 HECTD1Q9ULT8 2610 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 USP9YO00507 2555 aaPredicted RBP14.14□□□□□ -0.15
CPSF4-201ENST00000292476 DOPEY1Q5JWR5 2465 aa14.14□□□□□ -0.15
CPSF4-201ENST00000292476 UTP20O75691 2785 aaKnown RBP14.14□□□□□ -0.15
CPSF4-201ENST00000292476 H0YL77 283 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms