RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 THNSL2Q86YJ6 484 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 H1FOOQ8IZA3 346 aaPredicted RBP17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 OR10J5Q8NHC4 309 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 PSMF1Q92530 271 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 CALHM2Q9HA72 323 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 KIAA1324LA8MWY0 1029 aaPredicted RBP17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 SYNGR1O43759 233 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BKO60814 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 CNOT4O95628 575 aaKnown RBP17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 F10P00742 488 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 SERPINA7P05543 415 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BJP06899 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BOP23527 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BBP33778 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BDP58876 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BCP62807 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HLA-DRB3P79483 266 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST2H2BEQ16778 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 C9orf135Q5VTT2 229 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 SLC25A24Q6NUK1 477 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF880Q6PDB4 577 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BHQ93079 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BNQ99877 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2BMQ99879 126 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 CABLES2Q9BTV7 478 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 LRP5LA4QPB2 252 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 DNLZQ5SXM8 178 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 C20orf204Q6ZNR8 217 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF295-AS1Q8N0V1 137 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF383Q8NA42 475 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 PRRG4Q9BZD6 226 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF552Q9H707 407 aaPredicted RBP17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 WDFY3Q8IZQ1 3526 aa17.15■□□□□ 0.34
SYNGAP1-227ENST00000638142 RD3LP0DJH9 198 aa17.14■□□□□ 0.34
SYNGAP1-227ENST00000638142 ELOA3CA0A087WX78 387 aaPredicted RBP17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 B4E171 279 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 TSPAN7P41732 249 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 TCEAL6Q6IPX3 200 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 SPNS3Q6ZMD2 512 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 P4HA3Q7Z4N8 544 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 OR51H1Q8NH63 302 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 OR5P3Q8WZ94 311 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 RNF150Q9ULK6 438 aa17.14■□□□□ 0.33
SYNGAP1-227ENST00000638142 TGIF2-C20orf24A0A0A6YYL0 155 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 CD300LBA8K4G0 201 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 H3BP45 60 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 PSG2P11465 335 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 DEFA6Q01524 100 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 ZNF573Q86YE8 665 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 RNASE11Q8TAA1 199 aaKnown RBP17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 LSM10Q969L4 123 aaKnown RBP17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 URGCP-MRPS24S4R325 110 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 TRAV24A0A0B4J272 114 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 DEGS1O15121 323 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 NDUFS6O75380 124 aaKnown RBP17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 ARR3P36575 388 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 TMEM267Q0VDI3 215 aaPredicted RBP17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 SSPNQ14714 243 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 SCGB1C1Q8TD33 95 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 HLA-CQ95604 372 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 IER2Q9BTL4 223 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 PRO3102Q9H379 93 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 CISD1Q9NZ45 108 aaKnown RBP17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 GNG13Q9P2W3 67 aa17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 ERRFI1Q9UJM3 462 aaPredicted RBP17.13■□□□□ 0.33
SYNGAP1-227ENST00000638142 ZNF503-AS2A6NEH8 195 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 OR5B21A6NL26 309 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 NPIPB11E5RHQ5 1161 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 NGFP01138 241 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 HIST1H1BP16401 226 aaKnown RBP17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 GPX4P36969 197 aaPredicted RBP17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 LHX2P50458 406 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 PNRC1Q12796 327 aaPredicted RBP17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 TUSC5Q8IXB3 177 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 OR10D4PQ8NGN7 298 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 RDH5Q92781 318 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 POM121L2Q96KW2 1035 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 PSMG3Q9BT73 122 aaPredicted RBP17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 MPC1Q9Y5U8 109 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 HS3ST1O14792 307 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 PPP1R2P9O14990 202 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 ZNHIT1O43257 154 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 CD200P41217 278 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 SRYQ05066 204 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 DCAF12Q5T6F0 453 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 CDPF1Q6NVV7 123 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 FAM58AQ8N1B3 248 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 HIST3H2BBQ8N257 126 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 OR10V1Q8NGI7 309 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 PRDM13Q9H4Q3 707 aa17.12■□□□□ 0.33
SYNGAP1-227ENST00000638142 ANKRD30BLA7E2S9 258 aa17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 CYB5BO43169 146 aa17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 BCL2P10415 239 aa17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 CD81P60033 236 aa17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 GNG3P63215 75 aa17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 ACSF3Q4G176 576 aaPredicted RBP17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 FAM90A2PQ658T7 463 aa17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 MBD3L1Q8WWY6 194 aa17.11■□□□□ 0.33
SYNGAP1-227ENST00000638142 RPRMQ9NS64 109 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms