RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SLC35E4Q6ICL7 350 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 ZNF880Q6PDB4 577 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 C16orf87Q6PH81 154 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 BRD3OSQ6XYD6 125 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 ZNF497Q6ZNH5 498 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 C17orf107Q6ZR85 190 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 GDPD3Q7L5L3 318 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 C6orf201Q7Z4U5 140 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 Q8N7P7 452 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 TMEM229BQ8NBD8 167 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 OR4S1Q8NGB4 309 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 ZNF418Q8TF45 676 aaPredicted RBP8.09□□□□□ -1.11
CLN3-261ENST00000637686 MDFIQ99750 246 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 SIRT7Q9NRC8 400 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 A0A0A6YYJ9 748 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 ANKRD20A5PA0PJZ0 165 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 NAP1L6A6NFF2 107 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 M0R1W7 72 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 ORC5O43913 435 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 SSX5O60225 188 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 VENTXO95231 258 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 CD74P04233 296 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 FAUP35544 74 aaKnown RBP8.08□□□□□ -1.12
CLN3-261ENST00000637686 GDNFP39905 211 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 OR3A1P47881 315 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 TAS2R19P59542 299 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 ERVFRD-1P60508 538 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 ASAH1Q13510 395 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 KLF9Q13886 244 aaPredicted RBP8.08□□□□□ -1.12
CLN3-261ENST00000637686 EDDM3AQ14507 147 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 ZNF273Q14593 569 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 GRK1Q15835 563 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 STEAP3Q658P3 488 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 TRAT1Q6PIZ9 186 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 C9orf139Q6ZV77 190 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 TRAPPC6BQ86SZ2 158 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 HOGA1Q86XE5 327 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 LYSMD2Q8IV50 215 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 OR8H2Q8N162 312 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 SIGLECL1Q8N7X8 197 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 ZNF48Q96MX3 618 aaPredicted RBP8.08□□□□□ -1.12
CLN3-261ENST00000637686 FAAP24Q9BTP7 215 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 SUCNR1Q9BXA5 334 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 MBNL3Q9NUK0 354 aaKnown RBP8.08□□□□□ -1.12
CLN3-261ENST00000637686 ETAA1Q9NY74 926 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 AK3Q9UIJ7 227 aa8.08□□□□□ -1.12
CLN3-261ENST00000637686 FBN1P35555 2871 aaKnown RBP8.07□□□□□ -1.12
CLN3-261ENST00000637686 IGHV1-69DA0A0B4J2H0 117 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 MDFIC2A0A1B0GVS7 189 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TMEM30CPA0ZSE6 113 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 MEX3AA1L020 520 aaKnown RBP8.07□□□□□ -1.12
CLN3-261ENST00000637686 MEIOCA2RUB1 952 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 RNF212BA8MTL3 300 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 RNASEK-C17orf49H0YIS7 233 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 IGHV1-69P01742 117 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 FCGR3AP08637 254 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 CCL3L1P16619 93 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 KIR2DS4P43632 304 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 INPP1P49441 399 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TAS2R46P59540 309 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 BPIFB3P59826 476 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 HILS1P60008 231 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 KLRD1Q13241 179 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 MEF2DQ14814 521 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 KIR2DS1Q14954 304 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TUSC1Q2TAM9 212 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 KRTAP24-1Q3LI83 254 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TMEM30BQ3MIR4 351 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 VAX1Q5SQQ9 334 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 RSBN1Q5VWQ0 802 aaPredicted RBP8.07□□□□□ -1.12
CLN3-261ENST00000637686 OLFML2AQ68BL7 652 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 RBMS3Q6XE24 437 aaKnown RBP8.07□□□□□ -1.12
CLN3-261ENST00000637686 C1orf122Q6ZSJ8 110 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TOMM5Q8N4H5 51 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TPRX1Q8N7U7 411 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 DTX3Q8N9I9 347 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 MINDY2Q8NBR6 621 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 MRPL30Q8TCC3 161 aaKnown RBP8.07□□□□□ -1.12
CLN3-261ENST00000637686 NEK7Q8TDX7 302 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 NUDCD2Q8WVJ2 157 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TMEM158Q8WZ71 300 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 TNFRSF14Q92956 283 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 METTL8Q9H825 291 aaKnown RBP8.07□□□□□ -1.12
CLN3-261ENST00000637686 ZMAT3Q9HA38 289 aaKnown RBP8.07□□□□□ -1.12
CLN3-261ENST00000637686 RAB9BQ9NP90 201 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 ESM1Q9NQ30 184 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 IFT46Q9NQC8 304 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 ABCB10Q9NRK6 738 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 KLK11Q9UBX7 282 aa8.07□□□□□ -1.12
CLN3-261ENST00000637686 A0A1W2PPH5 198 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 A0A1W2PRD5 423 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 A0A1W2PRF3 423 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 A0A1W2PRM7 423 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 CENPXA8MT69 81 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 ZNF736B4DX44 427 aaPredicted RBP8.06□□□□□ -1.12
CLN3-261ENST00000637686 HSPB6O14558 160 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 LANCL1O43813 399 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 PTTG1O95997 202 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 MT-ND4P03905 459 aa8.06□□□□□ -1.12
CLN3-261ENST00000637686 CTXN2P0C2S0 81 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms