RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PRR18Q8N4B5 295 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 ZNF565Q8N9K5 539 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 OR1L1Q8NH94 360 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 DACT3Q96B18 629 aaPredicted RBP15.29■□□□□ 0.04
CLN3-254ENST00000637050 C14orf79Q96F83 325 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 OR6C3Q9NZP0 311 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 CTSZQ9UBR2 303 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 SLC25A10Q9UBX3 287 aaPredicted RBP15.29■□□□□ 0.04
CLN3-254ENST00000637050 SLC23A1Q9UHI7 598 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 LRBAP50851 2863 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 C15orf65H3BRN8 121 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 HEXAP06865 529 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 ZNF728P0DKX0 622 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 SSTR5P35346 364 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 EFNA4P52798 201 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 TAS2R31P59538 309 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 C4orf46Q504U0 113 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 FGFRL1Q8N441 504 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 OR52B4Q8NGK2 314 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 UBALD1Q8TB05 177 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 ZFAND1Q8TCF1 268 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 GALMQ96C23 342 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 CHODLQ9H9P2 273 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 OR1A1Q9P1Q5 309 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 CREBL2O60519 120 aaPredicted RBP15.28■□□□□ 0.04
CLN3-254ENST00000637050 CTSDP07339 412 aaPredicted RBP15.28■□□□□ 0.04
CLN3-254ENST00000637050 CGB3P0DN86 165 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 CGB7P0DN87 165 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 PI3P19957 117 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 IL2RGP31785 369 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 FXYD4P59646 89 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 UBE2MP61081 183 aaKnown RBP15.28■□□□□ 0.04
CLN3-254ENST00000637050 DHODHQ02127 395 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 MUC20Q8N307 709 aaPredicted RBP15.28■□□□□ 0.04
CLN3-254ENST00000637050 TOMM40LQ969M1 308 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 ARL11Q969Q4 196 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 TMEM230Q96A57 120 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 MED28Q9H204 178 aa15.28■□□□□ 0.04
CLN3-254ENST00000637050 COL12A1Q99715 3063 aa15.27■□□□□ 0.04
CLN3-254ENST00000637050 FAM172BPA6NC97 362 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 NDUFB3O43676 98 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 NDUFS7O75251 213 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 AKR1C4P17516 323 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 NDUFB7P17568 137 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 ZBTB25P24278 435 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 TMEM33P57088 247 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 PPP1R1AQ13522 171 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 TMEM128Q5BJH2 165 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 LRRC10Q5BKY1 277 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 CD276Q5ZPR3 534 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 ZNF431Q8TF32 576 aaPredicted RBP15.27■□□□□ 0.03
CLN3-254ENST00000637050 CORO2AQ92828 525 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 RAB1CQ92928 201 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 TIMD4Q96H15 378 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 TOLLIPQ9H0E2 274 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 ZNF69Q9UC07 566 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 C14orf166Q9Y224 244 aaKnown RBP15.27■□□□□ 0.03
CLN3-254ENST00000637050 OR2W1Q9Y3N9 320 aa15.27■□□□□ 0.03
CLN3-254ENST00000637050 DVL1O14640 695 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 SPINT2O43291 252 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 HSPA12AO43301 675 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 DHRS2Q13268 280 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 TCF23Q7RTU1 214 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 AKAP14Q86UN6 197 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 SLC38A6Q8IZM9 456 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 ARPC5LQ9BPX5 153 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 RSRP1Q9BUV0 290 aa15.26■□□□□ 0.03
CLN3-254ENST00000637050 TRGV10A0A0A0MS01 117 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 IGKV1D-13A0A0B4J2D9 117 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 MEX3AA1L020 520 aaKnown RBP15.25■□□□□ 0.03
CLN3-254ENST00000637050 PPIHO43447 177 aaKnown RBP15.25■□□□□ 0.03
CLN3-254ENST00000637050 IGKV1-13P0DP09 117 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 CEACAM6P40199 344 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 HTD2P86397 168 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 MEF2CQ06413 473 aaPredicted RBP15.25■□□□□ 0.03
CLN3-254ENST00000637050 NDUFA5Q16718 116 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 TMEM155Q4W5P6 130 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 AVPI1Q5T686 147 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 LPCAT3Q6P1A2 487 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 LYG2Q86SG7 212 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 RDH8Q9NYR8 311 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 C9orf170A2RU37 121 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 SSNA1O43805 119 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 HLA-AP01891 365 aaKnown RBP15.25■□□□□ 0.03
CLN3-254ENST00000637050 CD300CQ08708 224 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 FCN2Q15485 313 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 LDLRAD3Q86YD5 345 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 ZNF295-AS1Q8N0V1 137 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 RFESDQ8TAC1 157 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 ZNF486Q96H40 463 aaPredicted RBP15.25■□□□□ 0.03
CLN3-254ENST00000637050 LINC00574Q9H8X3 128 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 CALYQ9NYX4 217 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 LINC00312Q9Y6C7 94 aa15.25■□□□□ 0.03
CLN3-254ENST00000637050 hADV38S2A0JD32 116 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 F2RL2O00254 374 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 CCNKO75909 580 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 SULT1A3P0DMM9 295 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 SULT1A4P0DMN0 295 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 RPS2P15880 293 aaKnown RBP15.24■□□□□ 0.03
CLN3-254ENST00000637050 SUPT4H1P63272 117 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms