RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RNASEK-C17orf49H0YIS7 233 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 HLA-DQB1P01920 261 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 HNF1AP20823 631 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 OMGP23515 440 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 GNG2P59768 71 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 MRPS15P82914 257 aaKnown RBP16.11■□□□□ 0.17
UPF3A-211ENST00000618700 PITPNAQ00169 270 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 PRB3Q04118 309 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-211ENST00000618700 KLRD1Q13241 179 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 ARFRP1Q13795 201 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 NCR3LG1Q68D85 454 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 CNIH2Q6PI25 160 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 IL17RELQ6ZVW7 336 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 OR10A7Q8NGE5 316 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 ARL11Q969Q4 196 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 TAF9BQ9HBM6 251 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 EXTL2Q9UBQ6 330 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 MGAT4AQ9UM21 535 aa16.11■□□□□ 0.17
UPF3A-211ENST00000618700 F2RL2O00254 374 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 TPPPO94811 219 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 HBZP02008 142 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 IGHV4-38-2P0DP08 117 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 PTHLHP12272 177 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 HLA-DRB3P79483 266 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 SRSF7Q16629 238 aaKnown RBP eCLIP16.1■□□□□ 0.17
UPF3A-211ENST00000618700 BAIAP2L2Q6UXY1 529 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 RFESDQ8TAC1 157 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 UBALD1Q8TB05 177 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 NANPQ8TBE9 248 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 SETD6Q8TBK2 473 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 LHX4Q969G2 390 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 TMEM133Q9H2Q1 129 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 IDI2-AS1Q9NZ38 188 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 KCNIP1Q9NZI2 227 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 CDC42EP3Q9UKI2 254 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 MXRA5Q9NR99 2828 aa16.1■□□□□ 0.17
UPF3A-211ENST00000618700 NAV3Q8IVL0 2385 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 A0A087X0M5 115 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 CENPVL3A0A0U1RRI6 287 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 A0A1B0GX30 115 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 SPINT2O43291 252 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 FPR2P25090 351 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 CD34P28906 385 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 TALDO1P37837 337 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 CNPY1Q3B7I2 92 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 TMEM30BQ3MIR4 351 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 Q6ZS49 121 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 C5orf24Q7Z6I8 188 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 OR1L1Q8NH94 360 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 HEXA-AS1Q9H8Q6 139 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 RAB9BQ9NP90 201 aa16.09■□□□□ 0.17
UPF3A-211ENST00000618700 ZNF230Q9UIE0 474 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-211ENST00000618700 TNFSF8P32971 234 aa16.08■□□□□ 0.16
UPF3A-211ENST00000618700 UBE2E1P51965 193 aa16.08■□□□□ 0.16
UPF3A-211ENST00000618700 LOXL3P58215 753 aa16.08■□□□□ 0.16
UPF3A-211ENST00000618700 OR52W1Q6IF63 320 aa16.08■□□□□ 0.16
UPF3A-211ENST00000618700 OR52M1Q8NGK5 317 aa16.08■□□□□ 0.16
UPF3A-211ENST00000618700 GCDHQ92947 438 aaPredicted RBP16.08■□□□□ 0.16
UPF3A-211ENST00000618700 SUCNR1Q9BXA5 334 aa16.08■□□□□ 0.16
UPF3A-211ENST00000618700 MRPS7Q9Y2R9 242 aaKnown RBP16.08■□□□□ 0.16
UPF3A-211ENST00000618700 IGHV2-26A0A0B4J1V2 119 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 IGHV1-69DA0A0B4J2H0 117 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 TRDCB7Z8K6 153 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 IGHV1-69P01742 117 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 MADCAM1Q13477 382 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 UTF1Q5T230 341 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 GPR157Q5UAW9 335 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 PRR18Q8N4B5 295 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 OR11H6Q8NGC7 330 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 OR13D1Q8NGV5 346 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 DIRAS2Q96HU8 199 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 GFOD1Q9NXC2 390 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 NUP50Q9UKX7 468 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 ANAPC10Q9UM13 185 aa16.07■□□□□ 0.16
UPF3A-211ENST00000618700 IGHV3OR16-10A0A075B7F0 116 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 ODF3BA8MYP8 253 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 SDCBPO00560 298 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-211ENST00000618700 COX7A1P24310 79 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 PRSS3P35030 304 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 KIR2DS4P43632 304 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 CBX5P45973 191 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 HTD2P86397 168 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 KIR2DS1Q14954 304 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 LTC4SQ16873 150 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 SNX29P2Q8IUI4 249 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 PDZD9Q8IXQ8 264 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 PNKDQ8N490 385 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 OR6Q1Q8NGQ2 317 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 MAFIPQ8WZ33 124 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 GALMQ96C23 342 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 ABHD1Q96SE0 405 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 SOSTQ9BQB4 213 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 BEX2Q9BXY8 128 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 SCPEP1Q9HB40 452 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 ZNF286AQ9HBT8 521 aa16.06■□□□□ 0.16
UPF3A-211ENST00000618700 IGKV1D-8A0A087WSZ0 117 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 IGKV1-6A0A0C4DH72 117 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 MEIOCA2RUB1 952 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 FAM172BPA6NC97 362 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 FABP7O15540 132 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms