RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 FAAP24Q9BTP7 215 aa9.47□□□□□ -0.89
LINC00539-204ENST00000608957 PRDM13Q9H4Q3 707 aa9.47□□□□□ -0.89
LINC00539-204ENST00000608957 HRASLSQ9HDD0 168 aa9.47□□□□□ -0.89
LINC00539-204ENST00000608957 NLKQ9UBE8 527 aa9.47□□□□□ -0.89
LINC00539-204ENST00000608957 GLS2Q9UI32 602 aa9.47□□□□□ -0.89
LINC00539-204ENST00000608957 ZNF222Q9UK12 451 aa9.47□□□□□ -0.89
LINC00539-204ENST00000608957 TRAV24A0A0B4J272 114 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 FAM240BA0A1B0GVZ2 78 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 UBE2QL1A1L167 161 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 NAP1L6A6NFF2 107 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 MCRIP1C9JLW8 97 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 HSPB6O14558 160 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 SH2D1BO14796 132 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 DEGS1O15121 323 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 OR2H2O95918 312 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 MT-ND4P03905 459 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 GLAP06280 429 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 FCER2P06734 321 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 LIPFP07098 398 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 AKAIN1P0CW23 69 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 HKR1P10072 659 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 PSG2P11465 335 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 SPNP16150 400 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 NAT1P18440 290 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 DTYMKP23919 212 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 BTCP35070 178 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 AWAT1Q58HT5 328 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 BRICD5Q6PL45 260 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 Q6ZNX1 250 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 SLC36A1Q7Z2H8 476 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 GVQW1Q8N7I0 195 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 Q8N7P7 452 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 SUMF2Q8NBJ7 301 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 OR4C16Q8NGL9 310 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 C8orf46Q8TAG6 207 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 NEK7Q8TDX7 302 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 DYRK2Q92630 601 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 LHX4Q969G2 390 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 OCSTAMPQ9BR26 566 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 HDHD3Q9BSH5 251 aaPredicted RBP9.46□□□□□ -0.9
LINC00539-204ENST00000608957 DCTN5Q9BTE1 182 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 CHST6Q9GZX3 395 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 C12orf4Q9NQ89 552 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 DNAJB11Q9UBS4 358 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 OR14J1Q9UGF5 321 aa9.46□□□□□ -0.9
LINC00539-204ENST00000608957 OR2AT4A6NND4 320 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 ZNF736B4DX44 427 aaPredicted RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 CLDN34H7C241 214 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 HAX1O00165 279 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 SIRPB1O00241 398 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 SLC33A1O00400 549 aaPredicted RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 SIGLEC5O15389 551 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 NDUFB3O43676 98 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 CD74P04233 296 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 CD3DP04234 171 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 RNASE1P07998 156 aaKnown RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 TBPP20226 339 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 HLA-DMAP28067 261 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 CEBPDP49716 269 aaPredicted RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 RBM39Q14498 530 aaKnown RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 ACTBL2Q562R1 376 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 PAN3Q58A45 887 aaKnown RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 GPR157Q5UAW9 335 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 METTL11BQ5VVY1 283 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 OR52W1Q6IF63 320 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 STEAP1BQ6NZ63 245 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 CCBE1Q6UXH8 406 aaPredicted RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 RBMS3Q6XE24 437 aaKnown RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 VMO1Q7Z5L0 202 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 HOGA1Q86XE5 327 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 PDZD9Q8IXQ8 264 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 SNAPC3Q92966 411 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 DPCDQ9BVM2 203 aaPredicted RBP9.45□□□□□ -0.9
LINC00539-204ENST00000608957 DNTTIP1Q9H147 329 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 DPAGT1Q9H3H5 408 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 MCUBQ9NWR8 336 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 MAB21L2Q9Y586 359 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 KPTNQ9Y664 436 aa9.45□□□□□ -0.9
LINC00539-204ENST00000608957 IGHV1-69DA0A0B4J2H0 117 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 RFPL4AA6NLU0 287 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 RFPL4AL1F8VTS6 287 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 HOXA3O43365 443 aaPredicted RBP9.44□□□□□ -0.9
LINC00539-204ENST00000608957 RAB3DO95716 219 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 IGHV1-69P01742 117 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 FCGR3AP08637 254 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 LMO1P25800 156 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 SLC6A1P30531 599 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 GABRA2P47869 451 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 IL13RA1P78552 427 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 KLRD1Q13241 179 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 MEF2DQ14814 521 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 C11orf91Q3C1V1 193 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 PLA1AQ53H76 456 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 LRRC10Q5BKY1 277 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 RNASE10Q5GAN6 216 aaKnown RBP9.44□□□□□ -0.9
LINC00539-204ENST00000608957 FAAP20Q6NZ36 180 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 Q6YL49 198 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 PIP4P2Q8N4L2 257 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 CD177Q8N6Q3 437 aa9.44□□□□□ -0.9
LINC00539-204ENST00000608957 ZNRF1Q8ND25 227 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms