RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ZNF695Q8IW36 515 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 OR51H1Q8NH63 302 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 MARVELD3Q96A59 401 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 MUCL1Q96DR8 90 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 TMED3Q9Y3Q3 217 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.16□□□□□ -0.46
VRK3-217ENST00000599538 CRYAAP02489 173 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 FAM87AP0C7U9 286 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 UCP1P25874 307 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 NHLH1Q02575 133 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 SMCO1Q147U7 214 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 HMGN3Q15651 99 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 DMBX1Q8NFW5 382 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 OR10V1Q8NGI7 309 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 OR1L1Q8NH94 360 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 LRRC29Q8WV35 223 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 SNRNP40Q96DI7 357 aaKnown RBP12.16□□□□□ -0.46
VRK3-217ENST00000599538 ESRP2Q9H6T0 727 aaKnown RBP12.16□□□□□ -0.46
VRK3-217ENST00000599538 ZC4H2Q9NQZ6 224 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 FBXL17Q9UF56 701 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 A0A0G2JRQ6 117 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 HSPA12AO43301 675 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 HEXAP06865 529 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 FGF2P09038 288 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 F2RP25116 425 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 OR3A1P47881 315 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 TMEM33P57088 247 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 COL10A1Q03692 680 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 MOB1BQ7L9L4 216 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 CCDC28AQ8IWP9 274 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 CMTM1Q8IZ96 169 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 CD177Q8N6Q3 437 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 BVESQ8NE79 360 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 TMEM171Q8WVE6 324 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 ASF1BQ9NVP2 202 aa12.15□□□□□ -0.46
VRK3-217ENST00000599538 RCL1Q9Y2P8 373 aaKnown RBP12.15□□□□□ -0.46
VRK3-217ENST00000599538 A8MXK9 166 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 NPIPB11E5RHQ5 1161 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 PRRG2O14669 202 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 ADAM20O43506 726 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 NXPH3O95157 252 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 OR8U9P0C7N5 309 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 CEACAM6P40199 344 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 GLIPR1P48060 266 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 IZUMO4Q1ZYL8 232 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 GFRALQ6UXV0 394 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 SPERTQ8NA61 448 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 OR1S2Q8NGQ3 325 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 OR8U1Q8NH10 309 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 ANGPTL6Q8NI99 470 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 PPP1R3CQ9UQK1 317 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 RELNP78509 3460 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 KALRNO60229 2985 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 C12orf77C9JDV5 145 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 SIGLEC5O15389 551 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 SPRY3O43610 288 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 IGHV3-13P01766 116 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 FAM157CP0CG43 387 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 PSG2P11465 335 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 GLRXP35754 106 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 NMSQ5H8A3 153 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 CXorf66Q5JRM2 361 aaPredicted RBP12.14□□□□□ -0.47
VRK3-217ENST00000599538 FIP1L1Q6UN15 594 aaKnown RBP12.14□□□□□ -0.47
VRK3-217ENST00000599538 STPG2Q8N412 459 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 OR2V2Q96R30 315 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 DCTN5Q9BTE1 182 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 NARFLQ9H6Q4 476 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 PLA2G2EQ9NZK7 142 aa12.14□□□□□ -0.47
VRK3-217ENST00000599538 IGHV3OR15-7A0A075B7D8 119 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 TMEM30CPA0ZSE6 113 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 E5RGE8 158 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 H0Y980 276 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 SHOXO15266 292 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 ST8SIA3O43173 380 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 FGF16O43320 207 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 GFRA3O60609 400 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 GABRA2P47869 451 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 KLF3P57682 345 aaPredicted RBP12.13□□□□□ -0.47
VRK3-217ENST00000599538 POLR2GP62487 172 aaKnown RBP eCLIP12.13□□□□□ -0.47
VRK3-217ENST00000599538 GNMTQ14749 295 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 TUSC1Q2TAM9 212 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 GCSAMQ8N6F7 178 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 OR52L2PQ8NGH6 319 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 MRGPRDQ8TDS7 321 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 MRPL37Q9BZE1 423 aaKnown RBP12.13□□□□□ -0.47
VRK3-217ENST00000599538 MAGT1Q9H0U3 335 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 WFDC1Q9HC57 220 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 NSG2Q9Y328 171 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 USF3Q68DE3 2245 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 IGKV1-39P01597 117 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 IGKV1D-39P04432 117 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 CD200P41217 278 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 SRPXP78539 464 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 NHLH2Q02577 135 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 FAM201AQ5SY85 155 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 SLC35E4Q6ICL7 350 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 HSD17B13Q7Z5P4 300 aaPredicted RBP12.13□□□□□ -0.47
VRK3-217ENST00000599538 C1orf174Q8IYL3 243 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 PRR7Q8TB68 274 aa12.13□□□□□ -0.47
VRK3-217ENST00000599538 LRRC20Q8TCA0 184 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms