RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NPY4RP50391 375 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 HERV-K104P61576 105 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 FCN2Q15485 313 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 ABCA11PQ4W5N1 156 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 ACP7Q6ZNF0 438 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 ZNF826PQ6ZT77 177 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 SLC25A42Q86VD7 318 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 TCTE3Q8IZS6 198 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 UXS1Q8NBZ7 420 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 OR13C8Q8NGS7 320 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 MARCH1Q8TCQ1 289 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 SEC22CQ9BRL7 303 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 ZNF2Q9BSG1 426 aaPredicted RBP8.48□□□□□ -1.05
SS18-207ENST00000577636 WDR13Q9H1Z4 485 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 MS4A5Q9H3V2 200 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 HES4Q9HCC6 221 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 DECR2Q9NUI1 292 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 HIF1ANQ9NWT6 349 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 KCNIP1Q9NZI2 227 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 IL36RNQ9UBH0 155 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 MGAT4CQ9UBM8 478 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 TRAPPC2LQ9UL33 140 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 PCDHB10Q9UN67 800 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 NPTNQ9Y639 398 aa8.48□□□□□ -1.05
SS18-207ENST00000577636 TRBV6-6A0A0A6YYG2 114 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 TRAV24A0A0B4J272 114 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 TMEM30CPA0ZSE6 113 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 TMEM89A2RUT3 159 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 FAM172BPA6NC97 362 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 OR2AT4A6NND4 320 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 B4DSR2 109 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 TRIM77I1YAP6 450 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 SLC33A1O00400 549 aaPredicted RBP8.47□□□□□ -1.05
SS18-207ENST00000577636 FABP7O15540 132 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 NAPSAO96009 420 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 HPXP02790 462 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 GSTT2P0CG29 244 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 ZNF728P0DKX0 622 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 SULT1A3P0DMM9 295 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 SULT1A4P0DMN0 295 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 S100GP29377 79 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 CFHR2P36980 270 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 GATA4P43694 442 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 IL13RA1P78552 427 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 EFNB3Q15768 340 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 MPPED2Q15777 294 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 TMEM128Q5BJH2 165 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 LPCAT3Q6P1A2 487 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 Q6P435 159 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 SLC36A1Q7Z2H8 476 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 MOGAT3Q86VF5 341 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 C11orf53Q8IXP5 236 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 C12orf45Q8N5I9 185 aaPredicted RBP8.47□□□□□ -1.05
SS18-207ENST00000577636 SPICQ8N5J4 248 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 BOLLQ8N9W6 283 aaKnown RBP8.47□□□□□ -1.05
SS18-207ENST00000577636 OR5T2Q8NGG2 359 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 ASB13Q8WXK3 278 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 DYRK2Q92630 601 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 ST6GAL2Q96JF0 529 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 DMRTB1Q96MA1 342 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 PHB2Q99623 299 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 RANGRFQ9HD47 186 aaPredicted RBP8.47□□□□□ -1.05
SS18-207ENST00000577636 Q9N2K0 584 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 ZNF581Q9P0T4 197 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 RNF7Q9UBF6 113 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 FBXO9Q9UK97 447 aaPredicted RBP8.47□□□□□ -1.05
SS18-207ENST00000577636 WIPI2Q9Y4P8 454 aa8.47□□□□□ -1.05
SS18-207ENST00000577636 MEIKINA0A087WXM9 373 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 CEACAM18A8MTB9 384 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 SRRM5B3KS81 715 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 BET1O15155 118 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 SNAPC5O75971 98 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 IGHV1-46P01743 117 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 ADH4P08319 380 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 VSIG10L2P0DP72 767 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 CD34P28906 385 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 FCGR2CP31995 323 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 PRDX2P32119 198 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 GPR6P46095 362 aaPredicted RBP8.46□□□□□ -1.06
SS18-207ENST00000577636 COMPP49747 757 aaPredicted RBP8.46□□□□□ -1.06
SS18-207ENST00000577636 SEC61A1P61619 476 aaKnown RBP8.46□□□□□ -1.06
SS18-207ENST00000577636 MSMPQ1L6U9 139 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 FAM209AQ5JX71 171 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 DHRS11Q6UWP2 260 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 LYG2Q86SG7 212 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 LHFPL1Q86WI0 220 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 SGPP2Q8IWX5 399 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 C1orf87Q8N0U7 546 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 MUC20Q8N307 709 aaPredicted RBP8.46□□□□□ -1.06
SS18-207ENST00000577636 ZNF565Q8N9K5 539 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 TMEM185AQ8NFB2 350 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 OR4A4PQ8NGN8 299 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 CLDND2Q8NHS1 167 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 COQ8AQ8NI60 647 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 ITLN1Q8WWA0 313 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 TMEM186Q96B77 213 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 ZNF436Q9C0F3 470 aaPredicted RBP8.46□□□□□ -1.06
SS18-207ENST00000577636 RANBP3Q9H6Z4 567 aaPredicted RBP8.46□□□□□ -1.06
SS18-207ENST00000577636 SEBOXQ9HB31 216 aaPredicted RBP8.46□□□□□ -1.06
SS18-207ENST00000577636 TMEM165Q9HC07 324 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms