RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 OR11H6Q8NGC7 330 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 DYRK2Q92630 601 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 GCDHQ92947 438 aaPredicted RBP16.8■□□□□ 0.28
VPS53-210ENST00000571456 CREB3L1Q96BA8 519 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 RBM38Q9H0Z9 239 aaKnown RBP16.8■□□□□ 0.28
VPS53-210ENST00000571456 IDI2-AS1Q9NZ38 188 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 AK3Q9UIJ7 227 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 NBEAL2Q6ZNJ1 2754 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 TMEM89A2RUT3 159 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 MOGAT2Q3SYC2 334 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 OR4K15Q8NH41 348 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 DYNC2LI1Q8TCX1 351 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 ARL11Q969Q4 196 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 SUCNR1Q9BXA5 334 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 CLEC7AQ9BXN2 247 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 OCEL1Q9H607 264 aa16.79■□□□□ 0.28
VPS53-210ENST00000571456 C15orf65H3BRN8 121 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 F2RL2O00254 374 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 XRCC3O43542 346 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 TPPPO94811 219 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 ARFRP1Q13795 201 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 TUSC1Q2TAM9 212 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 HACD4Q5VWC8 232 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 ZNF596Q8TC21 504 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 ZNF418Q8TF45 676 aaPredicted RBP16.78■□□□□ 0.28
VPS53-210ENST00000571456 CCDC107Q8WV48 283 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 KIRREL1Q96J84 757 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 JMJD8Q96S16 334 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 COMMD3Q9UBI1 195 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 ADAM30Q9UKF2 790 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 KCNK7Q9Y2U2 307 aa16.78■□□□□ 0.28
VPS53-210ENST00000571456 TBL2Q9Y4P3 447 aaKnown RBP16.78■□□□□ 0.28
VPS53-210ENST00000571456 C12orf77C9JDV5 145 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 NPFFO15130 113 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 DIRAS3O95661 229 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 DTYMKP23919 212 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 SSTR5P35346 364 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 TALDO1P37837 337 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 MNDAP41218 407 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 KIR2DS4P43632 304 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 PRRX1P54821 245 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 LGALS4P56470 323 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 HTD2P86397 168 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 KIR2DS1Q14954 304 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 HMGN3Q15651 99 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 CDNFQ49AH0 187 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 ZNF626Q68DY1 528 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 RBMS3Q6XE24 437 aaKnown RBP16.77■□□□□ 0.28
VPS53-210ENST00000571456 ZNF782Q6ZMW2 699 aaPredicted RBP16.77■□□□□ 0.28
VPS53-210ENST00000571456 Q6ZS49 121 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 C8orf31Q8N9H6 132 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 GALMQ96C23 342 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 TAF9BQ9HBM6 251 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 ZNF69Q9UC07 566 aa16.77■□□□□ 0.28
VPS53-210ENST00000571456 A0A075B6Q4 140 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 IGHV2-26A0A0B4J1V2 119 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 MELTFP08582 738 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 GNB3P16520 340 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 RCC1P18754 421 aaPredicted RBP16.76■□□□□ 0.27
VPS53-210ENST00000571456 ZNF260Q3ZCT1 412 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 LY6G6FQ5SQ64 297 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 MINOS1Q5TGZ0 78 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 PRAMEF5Q5TYX0 476 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 STEAP3Q658P3 488 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 HCP5Q6MZN7 132 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 PNKDQ8N490 385 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 BEND2Q8NDZ0 799 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 OR9G1Q8NH87 305 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 C15orf40Q8WUR7 153 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 DGCR14Q96DF8 476 aaKnown RBP16.76■□□□□ 0.27
VPS53-210ENST00000571456 PRDM13Q9H4Q3 707 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 Q9N2K0 584 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 RABL2AQ9UBK7 228 aaPredicted RBP16.76■□□□□ 0.27
VPS53-210ENST00000571456 RABL2BQ9UNT1 228 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 MINOS1-NBL1R4GNA1 71 aa16.76■□□□□ 0.27
VPS53-210ENST00000571456 MEX3AA1L020 520 aaKnown RBP16.75■□□□□ 0.27
VPS53-210ENST00000571456 ODF3BA8MYP8 253 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 RGS11O94810 467 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 FBP1P09467 338 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 GNG2P59768 71 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 TMEM69Q5SWH9 247 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 ABHD12Q8N2K0 398 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 JPT1Q9UK76 154 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 FAM96BQ9Y3D0 163 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 A3GALT2U3KPV4 340 aa16.75■□□□□ 0.27
VPS53-210ENST00000571456 TRAV18A0A075B6X5 111 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 SDCBPO00560 298 aaPredicted RBP16.74■□□□□ 0.27
VPS53-210ENST00000571456 TOR1AO14656 332 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 HBZP02008 142 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 OMGP23515 440 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 COX7A1P24310 79 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 BRD3OSQ6XYD6 125 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 AUNIPQ9H7T9 357 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 GFOD1Q9NXC2 390 aa16.74■□□□□ 0.27
VPS53-210ENST00000571456 AMMECR1Q9Y4X0 333 aaPredicted RBP16.74■□□□□ 0.27
VPS53-210ENST00000571456 TRAV39A0A0B4J263 110 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 MEIOCA2RUB1 952 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 ARG1P05089 322 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 FCGR3AP08637 254 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 NFYBP25208 207 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms