RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZNRD1Q9P1U0 126 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 ADAM30Q9UKF2 790 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 KCNS2Q9ULS6 477 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 AUP1Q9Y679 476 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 POM121CA8CG34 1229 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 H3BUI4 141 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 SCGNO76038 276 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 TOX4O94842 621 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 IGLV1-47P01700 117 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 HBZP02008 142 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 SCTP09683 121 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 NAT1P18440 290 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 CD34P28906 385 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 GNMTQ14749 295 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 FAM189A2Q15884 450 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 PNLIPRP3Q17RR3 467 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 TMEM69Q5SWH9 247 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 RUSC1-AS1Q66K80 236 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 MZT2AQ6P582 158 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 BTNL3Q6UXE8 466 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 ZNF554Q86TJ5 538 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 DYNAPQ8N1N2 210 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 MFSD4AQ8N468 514 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 OR11H6Q8NGC7 330 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 ZNF596Q8TC21 504 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 C17orf50Q8WW18 174 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 OCSTAMPQ9BR26 566 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 PCGF1Q9BSM1 259 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 C6orf62Q9GZU0 229 aaPredicted RBP7.56□□□□□ -1.2
VPS35-211ENST00000569950 TOLLIPQ9H0E2 274 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 EXTL2Q9UBQ6 330 aa7.56□□□□□ -1.2
VPS35-211ENST00000569950 TENM1Q9UKZ4 2725 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 IGHV3OR16-10A0A075B7F0 116 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 TRAV40A0A0B4J280 105 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 FUOMA2VDF0 154 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 FAM172BPA6NC97 362 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 SLC31A2O15432 143 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 TPPPO94811 219 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 GSTT2P0CG29 244 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 GSTT2BP0CG30 244 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 GZMHP20718 246 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 DTYMKP23919 212 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 ETV6P41212 452 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 ZNF134P52741 427 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 HLA-DRB3P79483 266 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 SRSF7Q16629 238 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS35-211ENST00000569950 METTL11BQ5VVY1 283 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 ZNF626Q68DY1 528 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 C9orf139Q6ZV77 190 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 MOB1BQ7L9L4 216 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 TRAPPC6BQ86SZ2 158 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 LURAP1LQ8IV03 231 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 LYSMD2Q8IV50 215 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 PDZD9Q8IXQ8 264 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 BCL6BQ8N143 479 aaPredicted RBP7.55□□□□□ -1.2
VPS35-211ENST00000569950 OR52L2PQ8NGH6 319 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 OR52M1Q8NGK5 317 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 OR4P4Q8NGL7 312 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 LEAP2Q969E1 77 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 LHX4Q969G2 390 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 ARL11Q969Q4 196 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 ZNF48Q96MX3 618 aaPredicted RBP7.55□□□□□ -1.2
VPS35-211ENST00000569950 SDHCQ99643 169 aaPredicted RBP7.55□□□□□ -1.2
VPS35-211ENST00000569950 CABLES2Q9BTV7 478 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 TMEM133Q9H2Q1 129 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 RIMS4Q9H426 269 aaPredicted RBP7.55□□□□□ -1.2
VPS35-211ENST00000569950 DIABLOQ9NR28 239 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 GFOD1Q9NXC2 390 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 IDI2-AS1Q9NZ38 188 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 ZNF69Q9UC07 566 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 SESN1Q9Y6P5 492 aa7.55□□□□□ -1.2
VPS35-211ENST00000569950 FBN1P35555 2871 aaKnown RBP7.55□□□□□ -1.2
VPS35-211ENST00000569950 IGHV2-26A0A0B4J1V2 119 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 IGHV3-43A0A0B4J1X8 118 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 IGHV1-69DA0A0B4J2H0 117 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 MEIS3P1A6NDR6 274 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 TRDCB7Z8K6 153 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 LY6LH3BQJ8 138 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 RGS5O15539 181 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 LANCL1O43813 399 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 CRLF1O75462 422 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 IGHV1-69P01742 117 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 IGHV3-7P01780 117 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 CD3GP09693 182 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 IGHV3-43DP0DP04 118 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 FPR2P25090 351 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 HTD2P86397 168 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 DGCR2P98153 550 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 ARFRP1Q13795 201 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 ARL6IP1Q15041 203 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 FBLN7Q53RD9 439 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 IGSF11Q5DX21 431 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 C6orf183Q5T699 404 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 BRD3OSQ6XYD6 125 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 LHFPL4Q7Z7J7 247 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 HOGA1Q86XE5 327 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 SNX29P2Q8IUI4 249 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 ZNF565Q8N9K5 539 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 OR10A7Q8NGE5 316 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 OR52I2Q8NH67 350 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms