RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FRZBQ92765 325 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 GPR146Q96CH1 333 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 RBMXL1Q96E39 390 aaKnown RBP11.29□□□□□ -0.6
CLN3-210ENST00000563874 SSX3Q99909 188 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 R4GN57 208 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 ZNF729A6NN14 1252 aaPredicted RBP11.28□□□□□ -0.6
CLN3-210ENST00000563874 C9J4A7 227 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 PPP1R2P9O14990 202 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 METTL15P1P0C7V9 234 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 TRGC1P0CF51 173 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 SRD5A2P31213 254 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 HLA-BQ31612 363 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 KHDC3LQ587J8 217 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 SSX7Q7RTT5 188 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 OR2V1Q8NHB1 315 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 IFI44Q8TCB0 444 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 ABHD5Q8WTS1 349 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 C1QTNF5Q9BXJ0 243 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 OR51B6Q9H340 312 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 LOC102723971A0A1B0GUV8 181 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 TUSC2O75896 110 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 IFNA5P01569 189 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 SERPINE2P07093 398 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 FGF5P12034 268 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 FABP4P15090 132 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 FGF12P61328 243 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 TRIM61Q5EBN2 209 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 SLC35E3Q7Z769 313 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 M1APQ8TC57 530 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 FAM210BQ96KR6 192 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 TREM2Q9NZC2 230 aa11.28□□□□□ -0.6
CLN3-210ENST00000563874 ERRFI1Q9UJM3 462 aaPredicted RBP11.28□□□□□ -0.6
CLN3-210ENST00000563874 NGFP01138 241 aa11.27□□□□□ -0.6
CLN3-210ENST00000563874 F2RP25116 425 aa11.27□□□□□ -0.6
CLN3-210ENST00000563874 IL24Q13007 206 aa11.27□□□□□ -0.6
CLN3-210ENST00000563874 FAM90A2PQ658T7 463 aa11.27□□□□□ -0.6
CLN3-210ENST00000563874 ZNF880Q6PDB4 577 aa11.27□□□□□ -0.6
CLN3-210ENST00000563874 RIMS4Q9H426 269 aaPredicted RBP11.27□□□□□ -0.6
CLN3-210ENST00000563874 ZNF552Q9H707 407 aaPredicted RBP11.27□□□□□ -0.6
CLN3-210ENST00000563874 DEPPQ9NTK1 212 aa11.27□□□□□ -0.6
CLN3-210ENST00000563874 ATP23Q9Y6H3 246 aa11.27□□□□□ -0.6
CLN3-210ENST00000563874 CLEC18AA5D8T8 446 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 TRAPPC2LH3BP13 241 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 HBE1P02100 147 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 OTX2P32243 289 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 CXCL12P48061 93 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 ARF1P84077 181 aaKnown RBP11.27□□□□□ -0.61
CLN3-210ENST00000563874 ARL16Q0P5N6 197 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 FOXO1Q12778 655 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 LYSMD4Q5XG99 296 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 ZNF787Q6DD87 383 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 PCSK4Q6UW60 755 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 MRPL21Q7Z2W9 205 aaKnown RBP11.27□□□□□ -0.61
CLN3-210ENST00000563874 CLEC18CQ8NCF0 446 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 OR5D13Q8NGL4 314 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 OR1K1Q8NGR3 316 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 SPSB4Q96A44 273 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 S100PBPQ96BU1 408 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 PRRG4Q9BZD6 226 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 PRRC2CQ9Y520 2896 aaKnown RBP11.27□□□□□ -0.61
CLN3-210ENST00000563874 KIR2DS1A0A191URI9 304 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 ZNF503-AS2A6NEH8 195 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 A6NJY4 79 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 H0Y980 276 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 K7ESF4 209 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 CEACAM1P13688 526 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 GDF1P27539 372 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 KIR2DS4P43632 304 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 KIR2DS1Q14954 304 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 ABLIM2Q6H8Q1 611 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 HIST3H2BBQ8N257 126 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 OR2Y1Q8NGV0 311 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 SIRT7Q9NRC8 400 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 CACNG5Q9UF02 275 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 SH3BGRL2Q9UJC5 107 aa11.27□□□□□ -0.61
CLN3-210ENST00000563874 PINLYPA6NC86 204 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 LRRC3CA6NJW4 275 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 SEC14L6B5MCN3 397 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 DEFA6Q01524 100 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 ZNF726P1Q15940 193 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 GTF3AQ92664 365 aaKnown RBP11.26□□□□□ -0.61
CLN3-210ENST00000563874 ADGRG7Q96K78 797 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 SNX22Q96L94 193 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 TECTBQ96PL2 329 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 PRDM14Q9GZV8 571 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 OR1A1Q9P1Q5 309 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 LRFN1Q9P244 771 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 CXorf65A6NEN9 183 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 DNPH1O43598 174 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 LILRA1O75019 489 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 MMP9P14780 707 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 GPX4P36969 197 aaPredicted RBP11.26□□□□□ -0.61
CLN3-210ENST00000563874 ELLP55199 621 aaPredicted RBP11.26□□□□□ -0.61
CLN3-210ENST00000563874 GAMTQ14353 236 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 IL11RAQ14626 422 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 ESPL1Q14674 2120 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 RIPPLY2Q5TAB7 128 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 MKXQ8IYA7 352 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 ZDHHC23Q8IYP9 409 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 KCNE4Q8WWG9 221 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms