RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TMEM106BQ9NUM4 274 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 PLA2G3Q9NZ20 509 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 OTOGLQ3ZCN5 2332 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 ZNF878C9JN71 531 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 ZFAND5O76080 213 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 ISG15P05161 165 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 CTLA4P16410 223 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 GCH1P30793 250 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 FGF8P55075 233 aaPredicted RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 TLE1Q04724 770 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 MRPL14Q6P1L8 145 aaKnown RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 TMEM217Q8N7C4 229 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 SLC24A4Q8NFF2 622 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 OR5C1Q8NGR4 320 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 OR52N5Q8NH56 324 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 VN1R17PQ8TDU5 208 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 LRFN3Q9BTN0 628 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 TMEM59Q9BXS4 323 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 ZNF701Q9NV72 531 aaPredicted RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 CISD1Q9NZ45 108 aaKnown RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 OR6C3Q9NZP0 311 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 C19orf25Q9UFG5 118 aaPredicted RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 SDK2Q58EX2 2172 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 H3BML4 177 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 H7BYZ3 331 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 CST7O76096 145 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 HBE1P02100 147 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 CTSDP07339 412 aaPredicted RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 TMEM225BP0DP42 221 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 SUMO3P55854 103 aaPredicted RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 TMEM187Q14656 261 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 GNMTQ14749 295 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 DPPA3Q6W0C5 159 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 LINC00346Q8IVM7 164 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 PGAM5Q96HS1 289 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 C1orf147Q96MC9 270 aaPredicted RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 OR5B12Q96R08 314 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 METTL7AQ9H8H3 244 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 SEPSECSQ9HD40 501 aaKnown RBP11.45□□□□□ -0.58
CLK3-206ENST00000562078 TUBG2Q9NRH3 451 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 LOXL2Q9Y4K0 774 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 B3GALT1Q9Y5Z6 326 aa11.45□□□□□ -0.58
CLK3-206ENST00000562078 MAP1LC3B2A6NCE7 125 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 PITX3O75364 302 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 LGI3Q8N145 548 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 TOMM40LQ969M1 308 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 MAP1LC3BQ9GZQ8 125 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 CSTL1Q9H114 145 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 LIME1Q9H400 295 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 KIAA1549Q9HCM3 1950 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 IGLV1-36A0A0B4J1U3 117 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 SLC33A1O00400 549 aaPredicted RBP11.44□□□□□ -0.58
CLK3-206ENST00000562078 IGHMP01871 453 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 DUSP1P28562 367 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 RANP62826 216 aaKnown RBP11.44□□□□□ -0.58
CLK3-206ENST00000562078 C1orf185Q5T7R7 199 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 UNQ5815/PRO19632Q6UWF5 114 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 LCN15Q6UWW0 184 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 RNF138Q8WVD3 245 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 MOB3AQ96BX8 217 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 DEFB126Q9BYW3 111 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 Q9N2K0 584 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 FBLN5Q9UBX5 448 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 PRSS50Q9UI38 385 aa11.44□□□□□ -0.58
CLK3-206ENST00000562078 ZNF732B4DXR9 585 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 HRASP01112 189 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 CELA2AP08217 269 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 DYNLT3P51808 116 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 FREM2Q5SZK8 3169 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 CEBPZOSA8MTT3 80 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 PROB1E7EW31 1015 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 MS4A18H0YCH9 400 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 HPNP05981 417 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 PTGDSP41222 190 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 POU3F1Q03052 451 aaPredicted RBP11.43□□□□□ -0.58
CLK3-206ENST00000562078 FMODQ06828 376 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 MS4A18Q3C1V0 323 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 DCAF12Q5T6F0 453 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 DHRS13Q6UX07 377 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 WDFY1Q8IWB7 410 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 OR4C5Q8NGB2 326 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 C18orf12Q96KH6 178 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 SMIM7Q9BQ49 75 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 MAGT1Q9H0U3 335 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 ZNF552Q9H707 407 aaPredicted RBP11.43□□□□□ -0.58
CLK3-206ENST00000562078 WDR54Q9H977 334 aa11.43□□□□□ -0.58
CLK3-206ENST00000562078 ELL3Q9HB65 397 aaPredicted RBP11.43□□□□□ -0.58
CLK3-206ENST00000562078 EP300Q09472 2414 aaPredicted RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 LRRC3CA6NJW4 275 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 NPIPA5E9PKD4 350 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 TOMM40O96008 361 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 CLDN17P56750 224 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 TLE3Q04726 772 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 PCOLCEQ15113 449 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 PLPPR5Q32ZL2 321 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 BSXQ3C1V8 233 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 PHLDA2Q53GA4 152 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 ZNF787Q6DD87 383 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 OR5L1Q8NGL2 311 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 OR2T10Q8NGZ9 312 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms