RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 LDLRAD3Q86YD5 345 aa14.98□□□□□ -0.01
SNX1-208ENST00000559844 OR11L1Q8NGX0 322 aa14.98□□□□□ -0.01
SNX1-208ENST00000559844 OR10J5Q8NHC4 309 aa14.98□□□□□ -0.01
SNX1-208ENST00000559844 SECTM1Q8WVN6 248 aa14.98□□□□□ -0.01
SNX1-208ENST00000559844 MSI2Q96DH6 328 aaKnown RBP14.98□□□□□ -0.01
SNX1-208ENST00000559844 PHYHIPLQ96FC7 376 aa14.98□□□□□ -0.01
SNX1-208ENST00000559844 KIRREL1Q96J84 757 aa14.98□□□□□ -0.01
SNX1-208ENST00000559844 ZNF471Q9BX82 626 aaPredicted RBP14.98□□□□□ -0.01
SNX1-208ENST00000559844 S100GP29377 79 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 S100A10P60903 97 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 BEX5Q5H9J7 111 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 PLPPR1Q8TBJ4 325 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 GLYATL2Q8WU03 294 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 AQP10Q96PS8 301 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 ZFP57Q9NU63 452 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 TAAR3PQ9P1P4 343 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 TRAPPC2LQ9UL33 140 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 WIPI2Q9Y4P8 454 aa14.97□□□□□ -0.01
SNX1-208ENST00000559844 F5H0A9 414 aaPredicted RBP14.96□□□□□ -0.01
SNX1-208ENST00000559844 RLN2P04090 185 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 RCC1P18754 421 aaPredicted RBP14.96□□□□□ -0.01
SNX1-208ENST00000559844 LMO1P25800 156 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 GLRXP35754 106 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 LUMP51884 338 aaPredicted RBP14.96□□□□□ -0.01
SNX1-208ENST00000559844 TMEM108Q6UXF1 575 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 WDR82Q6UXN9 313 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 CMTM1Q8IZ96 169 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 H1FOOQ8IZA3 346 aaPredicted RBP14.96□□□□□ -0.01
SNX1-208ENST00000559844 FAM222BQ8WU58 562 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 MSL2Q9HCI7 577 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 MED9Q9NWA0 146 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 OR5AC2Q9NZP5 309 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 TMED3Q9Y3Q3 217 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 ABCA4P78363 2273 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 IGHV3-64DA0A0J9YX35 117 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 C3orf80F5H4A9 247 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 RRASP10301 218 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 ZNF250P15622 560 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 CD40P25942 277 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 CD200P41217 278 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 RPS23P62266 143 aaKnown RBP14.96□□□□□ -0.01
SNX1-208ENST00000559844 BSPH1Q075Z2 132 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 PRAMEF6Q5VXH4 476 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 ACP7Q6ZNF0 438 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 PLPPR2Q96GM1 343 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 SLC25A32Q9H2D1 315 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 ESRP2Q9H6T0 727 aaKnown RBP14.96□□□□□ -0.01
SNX1-208ENST00000559844 OR2W1Q9Y3N9 320 aa14.96□□□□□ -0.01
SNX1-208ENST00000559844 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.95□□□□□ -0.02
SNX1-208ENST00000559844 A0A1B0GW55 424 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 DPRXA6NFQ7 191 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 IGHV3-13P01766 116 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 NMBP08949 121 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 DUX4L2P0CJ85 424 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 DUX4L3P0CJ86 424 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 DUX4L4P0CJ87 422 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 DUX4L5P0CJ88 424 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 DUX4L6P0CJ89 424 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 DUX4L7P0CJ90 424 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 PTAFRP25105 342 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 ZNF818PQ6ZRF7 136 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 TBC1D26Q86UD7 250 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 OR1S1Q8NH92 325 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 PCNPQ8WW12 178 aaKnown RBP14.95□□□□□ -0.02
SNX1-208ENST00000559844 PSMG3-AS1Q96PY0 264 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 SPOCK3Q9BQ16 436 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 TMEM222Q9H0R3 208 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 MBNL3Q9NUK0 354 aaKnown RBP14.95□□□□□ -0.02
SNX1-208ENST00000559844 DUX4Q9UBX2 424 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 OR14J1Q9UGF5 321 aa14.95□□□□□ -0.02
SNX1-208ENST00000559844 UBE2J1Q9Y385 318 aaPredicted RBP14.95□□□□□ -0.02
SNX1-208ENST00000559844 IGKV1D-13A0A0B4J2D9 117 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 TMEM30CPA0ZSE6 113 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 SIAH2O43255 324 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 IGKV1-13P0DP09 117 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 SMIM21Q3B7S5 101 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 SP5Q6BEB4 398 aaPredicted RBP14.94□□□□□ -0.02
SNX1-208ENST00000559844 ZNF826PQ6ZT77 177 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 C5orf24Q7Z6I8 188 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 STOML3Q8TAV4 291 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 TP53RKQ96S44 253 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 PLCE1Q9P212 2302 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 PIGBOS1A0A0B4J2F0 54 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 DUXBA0A1W2PPF3 345 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 IFNL4K9M1U5 179 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 ABCD4O14678 606 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 KLF3P57682 345 aaPredicted RBP14.94□□□□□ -0.02
SNX1-208ENST00000559844 NKX6-1P78426 367 aaPredicted RBP14.94□□□□□ -0.02
SNX1-208ENST00000559844 HMGN3Q15651 99 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 NCMAPQ5T1S8 102 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 SLC35E4Q6ICL7 350 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 LYZL2Q7Z4W2 148 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 PDZD9Q8IXQ8 264 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 OR2Z1Q8NG97 314 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 OR10Z1Q8NGY1 313 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 RRNAD1Q96FB5 475 aaKnown RBP14.94□□□□□ -0.02
SNX1-208ENST00000559844 TMEM56Q96MV1 263 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 CCL28Q9NRJ3 127 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 DUSP13Q9UII6 198 aa14.94□□□□□ -0.02
SNX1-208ENST00000559844 TMEM56-RWDD3S4R434 201 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms