RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 LGALS4P56470 323 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 CPEB3Q8NE35 698 aaKnown RBP12.92□□□□□ -0.34
CUX1-214ENST00000550008 ADAMTS17Q8TE56 1095 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 LPAR3Q9UBY5 353 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 ZNF705FA8MVS1 300 aaPredicted RBP12.91□□□□□ -0.34
CUX1-214ENST00000550008 H7BYZ3 331 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 GALR2O43603 387 aaPredicted RBP12.91□□□□□ -0.34
CUX1-214ENST00000550008 ARG1P05089 322 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 S100A8P05109 93 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 OR5G3P0C626 314 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 ZNF705DP0CH99 300 aaPredicted RBP12.91□□□□□ -0.34
CUX1-214ENST00000550008 ZNF705BP0CI00 300 aaPredicted RBP12.91□□□□□ -0.34
CUX1-214ENST00000550008 TNFRSF1AP19438 455 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 EWSR1Q01844 656 aaKnown RBP eCLIP12.91□□□□□ -0.342e-6■■■□□ 16.9
CUX1-214ENST00000550008 HSD17B13Q7Z5P4 300 aaPredicted RBP12.91□□□□□ -0.34
CUX1-214ENST00000550008 PIPOXQ9P0Z9 390 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 SYNGR3O43761 229 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 CD74P04233 296 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 COX5AP20674 150 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 INO80CQ6PI98 192 aaPredicted RBP12.91□□□□□ -0.34
CUX1-214ENST00000550008 PAQR4Q8N4S7 273 aaPredicted RBP12.91□□□□□ -0.34
CUX1-214ENST00000550008 OR52L2PQ8NGH6 319 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 TAAR6Q96RI8 345 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 CDK2AP1O14519 115 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 OR2A4O95047 310 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 OR2H2O95918 312 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 RTL8BQ17RB0 113 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 STUMQ69YW2 141 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 FAM24BQ8N5W8 94 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 OR2A7Q96R45 310 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 RAB40CQ96S21 281 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 GLRX2Q9NS18 164 aa12.91□□□□□ -0.34
CUX1-214ENST00000550008 MSGN1A6NI15 193 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 NTN3O00634 580 aaPredicted RBP12.9□□□□□ -0.34
CUX1-214ENST00000550008 RHBDL1O75783 438 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 MT-ND4LP03901 98 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 ASPHD2Q6ICH7 369 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 ACTR3CQ9C0K3 210 aaPredicted RBP12.9□□□□□ -0.34
CUX1-214ENST00000550008 FABP1P07148 127 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 LYZL4Q96KX0 146 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 UHRF2Q96PU4 802 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 MDFIC2A0A1B0GVS7 189 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 MBPP02686 304 aaPredicted RBP12.9□□□□□ -0.34
CUX1-214ENST00000550008 ZNF528Q3MIS6 628 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 LHFPL5Q8TAF8 219 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 CIB3Q96Q77 187 aaPredicted RBP12.9□□□□□ -0.34
CUX1-214ENST00000550008 DLL3Q9NYJ7 618 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 OSGIN2Q9Y236 505 aa12.9□□□□□ -0.34
CUX1-214ENST00000550008 NUDT19A8MXV4 375 aa12.9□□□□□ -0.35
CUX1-214ENST00000550008 SLC25A53Q5H9E4 307 aa12.9□□□□□ -0.35
CUX1-214ENST00000550008 VWA1Q6PCB0 445 aa12.9□□□□□ -0.35
CUX1-214ENST00000550008 MRPL41Q8IXM3 137 aaKnown RBP12.9□□□□□ -0.35
CUX1-214ENST00000550008 OR52M1Q8NGK5 317 aa12.9□□□□□ -0.35
CUX1-214ENST00000550008 RNF122Q9H9V4 155 aa12.9□□□□□ -0.35
CUX1-214ENST00000550008 PTGDSP41222 190 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 FFAR4Q5NUL3 377 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 SLC25A28Q96A46 364 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 WNT9BO14905 357 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 CELA3BP08861 270 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 COX7A1P24310 79 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 MDH2P40926 338 aaKnown RBP12.89□□□□□ -0.35
CUX1-214ENST00000550008 OR1L1Q8NH94 360 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 MTCH1Q9NZJ7 389 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 OR1A1Q9P1Q5 309 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 MKI67P46013 3256 aaKnown RBP12.89□□□□□ -0.35
CUX1-214ENST00000550008 A0A1W2PPQ1 181 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 NDUFB3O43676 98 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 DVL1P1P54792 670 aaPredicted RBP12.89□□□□□ -0.35
CUX1-214ENST00000550008 TMEM65Q6PI78 240 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 ETV3LQ6ZN32 361 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 ZIC4Q8N9L1 334 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 NTNG2Q96CW9 530 aa12.89□□□□□ -0.35
CUX1-214ENST00000550008 hCG_38984A0A1B0GV85 526 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 YIF1AO95070 293 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 KLF14Q8TD94 323 aaPredicted RBP12.88□□□□□ -0.35
CUX1-214ENST00000550008 LRFN3Q9BTN0 628 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 CABLES2Q9BTV7 478 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 LAMP3Q9UQV4 416 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 FAM208BQ5VWN6 2430 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 MAP1LC3B2A6NCE7 125 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 LRRC3CA6NJW4 275 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 ATP6V0CP27449 155 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 COL10A1Q03692 680 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 SLC35E1Q96K37 410 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 MAP1LC3BQ9GZQ8 125 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 PATZ1Q9HBE1 687 aaKnown RBP12.88□□□□□ -0.35
CUX1-214ENST00000550008 NEURL1O76050 574 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 F2RP25116 425 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 MOB3BQ86TA1 216 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 ZNF429Q86V71 674 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 RND1Q92730 232 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 CLN8Q9UBY8 286 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 hCG_1809904A0A1W2PP81 198 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 A0A1W2PPE2 198 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 A0A1W2PR64 198 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 A0A1W2PRV1 198 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 TMEM11P17152 192 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 GUCA2BQ16661 112 aa12.88□□□□□ -0.35
CUX1-214ENST00000550008 ZNF98A6NK75 572 aa12.87□□□□□ -0.35
CUX1-214ENST00000550008 APELAP0DMC3 54 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms