RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RCC2Q9P258 522 aaKnown RBP14.05□□□□□ -0.16
CUX1-213ENST00000549414 A0A1W2PPQ1 181 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 RAB19A4D1S5 217 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 MFNGO00587 321 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 TMPRSS2O15393 492 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 FGF12P61328 243 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 ZNF429Q86V71 674 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 NIT2Q9NQR4 276 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 PPP5D1E7EU14 171 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 FFAR4Q5NUL3 377 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 STUMQ69YW2 141 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 LIPGQ9Y5X9 500 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 KLF7O75840 302 aaPredicted RBP14.05□□□□□ -0.16
CUX1-213ENST00000549414 TMEM50BP56557 158 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 RUNX1Q01196 453 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 IZUMO4Q1ZYL8 232 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 TMEM65Q6PI78 240 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 TCEAL7Q9BRU2 100 aa14.05□□□□□ -0.16
CUX1-213ENST00000549414 MAP1LC3B2A6NCE7 125 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 ARG1P05089 322 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 INO80CQ6PI98 192 aaPredicted RBP14.04□□□□□ -0.16
CUX1-213ENST00000549414 MAP1LC3BQ9GZQ8 125 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 CSPG4Q6UVK1 2322 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 ST8SIA5O15466 376 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 G6PCP35575 357 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 KCNJ3P48549 501 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 UCP2P55851 309 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 FADS6Q8N9I5 356 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 TMEM54Q969K7 222 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 NCOR2Q9Y618 2525 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 BTBD17A6NE02 478 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 NDUFB3O43676 98 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 CD74P04233 296 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 P2RY1P47900 373 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 SLC36A1Q7Z2H8 476 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 OR10S1Q8NGN2 331 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 OR2A4O95047 310 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 OR2A7Q96R45 310 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 SLC35B3Q9H1N7 401 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 ZNF552Q9H707 407 aaPredicted RBP14.04□□□□□ -0.16
CUX1-213ENST00000549414 ATPIF1Q9UII2 106 aa14.04□□□□□ -0.16
CUX1-213ENST00000549414 PLXNA4Q9HCM2 1894 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 ZNF345Q14585 488 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 ZNF528Q3MIS6 628 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 NCR3LG1Q68D85 454 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 ETV3LQ6ZN32 361 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 OVCH2Q7RTZ1 564 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 SAT2Q96F10 170 aaPredicted RBP14.03□□□□□ -0.16
CUX1-213ENST00000549414 TIMP4Q99727 224 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 CXorf66Q5JRM2 361 aaPredicted RBP14.03□□□□□ -0.16
CUX1-213ENST00000549414 LRFN3Q9BTN0 628 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 CDS2O95674 445 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 RD3LP0DJH9 198 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 ACP1P24666 158 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 ERHP84090 104 aaKnown RBP14.03□□□□□ -0.16
CUX1-213ENST00000549414 CALHM1Q8IU99 346 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 FDCSPQ8NFU4 85 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 TPPP3Q9BW30 176 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 ZNF703Q9H7S9 590 aaPredicted RBP14.03□□□□□ -0.16
CUX1-213ENST00000549414 RNF122Q9H9V4 155 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 CLDN16Q9Y5I7 305 aa14.03□□□□□ -0.16
CUX1-213ENST00000549414 HFEQ30201 348 aa14.02□□□□□ -0.16
CUX1-213ENST00000549414 DEPPQ9NTK1 212 aa14.02□□□□□ -0.16
CUX1-213ENST00000549414 NQO2P16083 231 aa14.02□□□□□ -0.16
CUX1-213ENST00000549414 CCL8P80075 99 aa14.02□□□□□ -0.16
CUX1-213ENST00000549414 BATFQ16520 125 aa14.02□□□□□ -0.16
CUX1-213ENST00000549414 MBP02144 154 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 MBPP02686 304 aaPredicted RBP14.02□□□□□ -0.17
CUX1-213ENST00000549414 CD82P27701 267 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 SUB1P53999 127 aaKnown RBP eCLIP14.02□□□□□ -0.17
CUX1-213ENST00000549414 LRRC10Q5BKY1 277 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 OR13D1Q8NGV5 346 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 GUCD1Q96NT3 240 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 WISP1O95388 367 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 CD3EP07766 207 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 IGFBP3P17936 291 aaPredicted RBP14.02□□□□□ -0.17
CUX1-213ENST00000549414 ATP6V0CP27449 155 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 MOB3BQ86TA1 216 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 OR4A4PQ8NGN8 299 aa14.02□□□□□ -0.17
CUX1-213ENST00000549414 HEATR1Q9H583 2144 aaKnown RBP14.01□□□□□ -0.17
CUX1-213ENST00000549414 EIF3GO75821 320 aaKnown RBP eCLIP14.01□□□□□ -0.17
CUX1-213ENST00000549414 OR2H2O95918 312 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 OR52L2PQ8NGH6 319 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 ABHD14BQ96IU4 210 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 GNB4Q9HAV0 340 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 IGKV1-9A0A0C4DH69 117 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 OOEPA6NGQ2 149 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 COX7A1P24310 79 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 IL24Q13007 206 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 C15orf54Q8N8G6 183 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 PIPOXQ9P0Z9 390 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 POMT1Q9Y6A1 747 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 GBF1Q92538 1859 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 MPTX1A8MV57 137 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 C9orf172C9J069 976 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 ID4P47928 161 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 ADAMTS17Q8TE56 1095 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 R3HDM4Q96D70 268 aa14.01□□□□□ -0.17
CUX1-213ENST00000549414 SCGB1D1O95968 90 aa14□□□□□ -0.17
CUX1-213ENST00000549414 F2RP25116 425 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms