RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TNFSF12O43508 249 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 NDUFA2O43678 99 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TNFSF10P50591 281 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 KRTDAPP60985 99 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 ROM1Q03395 351 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF816Q0VGE8 651 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-211ENST00000543710 LILRA3Q8N6C8 439 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-211ENST00000543710 SYT8Q8NBV8 401 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 DEFB108BQ8NET1 73 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 CCL17Q92583 94 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM45BQ96B21 275 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 DPH3Q96FX2 82 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 C3orf80F5H4A9 247 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 M0R2Z0 102 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TCTN1Q2MV58 587 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 C1orf100Q5SVJ3 147 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 MOB3AQ96BX8 217 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 OR2D2Q9H210 308 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 RNF122Q9H9V4 155 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 SAP30LQ9HAJ7 183 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 RNF7Q9UBF6 113 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 OPN4Q9UHM6 478 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 PSME4Q14997 1843 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 FCN1O00602 326 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 FABP4P15090 132 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 B4GALT1P15291 398 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 RND3P61587 244 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 SELENOTP62341 195 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 SRSF7Q16629 238 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS13D-211ENST00000543710 LTC4SQ16873 150 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 MRPL52Q86TS9 123 aaKnown RBP6.83□□□□□ -1.32
VPS13D-211ENST00000543710 C2CD4CQ8TF44 421 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 RASL11BQ9BPW5 248 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 NAT8BQ9UHF3 227 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 FGF5P12034 268 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TIAL1Q01085 375 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TOMM20LQ6UXN7 152 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 FAM90A1Q86YD7 464 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 UBAC2Q8NBM4 344 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 WNT2BQ93097 391 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 A0A1W2PPQ1 181 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TCRBV16S1A1N1A0A5B0 115 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 CD74P04233 296 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 HTR1DP28221 377 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 MC5RP33032 325 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 LTBRP36941 435 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 OPRK1P41145 380 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM33P57088 247 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 GUCA2AQ02747 115 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 PDCD1Q15116 288 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 NSUN5P2Q63ZY6 315 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 ETV3LQ6ZN32 361 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 OR2M3Q8NG83 312 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 OR5AU1Q8NGC0 362 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF596Q8TC21 504 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 DTD1Q8TEA8 209 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM54Q969K7 222 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 PSMG3Q9BT73 122 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-211ENST00000543710 FRRS1LQ9P0K9 344 aa6.83□□□□□ -1.32
VPS13D-211ENST00000543710 LOC102723996A0A087X1L8 192 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 C11orf94C9JXX5 98 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 SPRY3O43610 288 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF207O43670 478 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 ZFPL1O95159 310 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 P01737 135 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 ASAH2BP0C7U1 165 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 MPZP25189 248 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 RNASEKQ6P5S7 137 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 ZPLD1Q8TCW7 415 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 PACRGQ96M98 296 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 MRPS18CQ9Y3D5 142 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 SRSF10O75494 262 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 DXOO77932 396 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 VENTXO95231 258 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 GYPAP02724 150 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 OR4A8P0C604 315 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM50BP56557 158 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 RBM11P57052 281 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 Q3ZCU0 254 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 AWAT1Q58HT5 328 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 TEPPQ6URK8 271 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 SIGLEC12Q96PQ1 595 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 CITED1Q99966 193 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 GPR35Q9HC97 309 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 A0A1W2PNR3 127 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 CYR61O00622 381 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 CIDEAO60543 219 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 NQO2P16083 231 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 GFRA1P56159 465 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 RPS11P62280 158 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 IGLV3-21P80748 117 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 LINC01559Q495D7 138 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 ACSM6Q6P461 480 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 WDFY1Q8IWB7 410 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 NECAP1Q8NC96 275 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 CACNG5Q9UF02 275 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF230Q9UIE0 474 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 ZDHHC8Q9ULC8 765 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 URB1O60287 2271 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 FAM90A9PA6NNJ1 464 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms