RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CCL19Q99731 98 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 CLEC5AQ9NY25 188 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 A1L4Q6 167 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 INHBBP09529 407 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 SPP1P10451 314 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 CDC34P49427 236 aaPredicted RBP12.2□□□□□ -0.46
USP3-204ENST00000540797 IL24Q13007 206 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 MUC15Q8N387 334 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 GCSAMQ8N6F7 178 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 WDR31Q8NA23 367 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 OR1L8Q8NGR8 309 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 TMEM54Q969K7 222 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 MARVELD1Q9BSK0 173 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 PRDM14Q9GZV8 571 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 GVINP1Q7Z2Y8 2422 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 MAP1LC3B2A6NCE7 125 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 CHST1O43916 411 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 GAPDHP04406 335 aaKnown RBP12.2□□□□□ -0.46
USP3-204ENST00000540797 ERVFC1-1P60608 527 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 EGR4Q05215 589 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 VWA1Q6PCB0 445 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 FAM57AQ8TBR7 257 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 MAP1LC3BQ9GZQ8 125 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 RBM38Q9H0Z9 239 aaKnown RBP12.2□□□□□ -0.46
USP3-204ENST00000540797 FCGR3AP08637 254 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 SCN5AQ14524 2016 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 SSX7Q7RTT5 188 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 DUSP18Q8NEJ0 188 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 HBZP02008 142 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 FAM27E3Q08E93 113 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 OR10G4Q8NGN3 311 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 OR10G9Q8NGN4 311 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 OR10G7Q8NGN6 311 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 LINC00470Q9BZP3 86 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 A0A0G2JMM0 328 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 A0A1W2PPB8 328 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 A0A1W2PRS3 328 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 KIR3DP1A8MWS1 328 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 TMEM229AB2RXF0 380 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 IGHMP01871 453 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 SLC6A1P30531 599 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 MIDNQ504T8 468 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 EP300Q09472 2414 aaPredicted RBP12.19□□□□□ -0.46
USP3-204ENST00000540797 SMPD2O60906 423 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 PDLIM4P50479 330 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 TIMM23BQ5SRD1 257 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 OR5M8Q8NGP6 311 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 TMEM45BQ96B21 275 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 CABLES2Q9BTV7 478 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 PKIBQ9C010 78 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 RHOFQ9HBH0 211 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 FBXL17Q9UF56 701 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 V9GYH0 126 aa12.19□□□□□ -0.46
USP3-204ENST00000540797 IGLV3-12A0A075B6K2 115 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 B9A039 149 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 S100A8P05109 93 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 ISG15P05161 165 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 PSG2P11465 335 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 KCNMB1Q16558 191 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 SEZ6L2Q6UXD5 910 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 Q8WTZ3 238 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 WDR61Q9GZS3 305 aaKnown RBP12.18□□□□□ -0.46
USP3-204ENST00000540797 ASCL3Q9NQ33 180 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 PPP1R2P9O14990 202 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 ICMTO60725 284 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 PAX5Q02548 391 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 KIAA0141Q14154 515 aaPredicted RBP12.18□□□□□ -0.46
USP3-204ENST00000540797 CLEC12BQ2HXU8 276 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 C10orf128Q5T292 105 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 RNF2Q99496 336 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 PATJQ8NI35 1801 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 LCTP09848 1927 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 TRBV5-5A0A0J9YX44 114 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 DYNLT3P51808 116 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 SLC25A42Q86VD7 318 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 AICDAQ9GZX7 198 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 FAM206AQ9NX38 181 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 MIOXQ9UGB7 285 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 RP1P56715 2156 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 ADRB1P08588 477 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 MRPL24Q96A35 216 aaKnown RBP12.18□□□□□ -0.46
USP3-204ENST00000540797 PLSCR3Q9NRY6 295 aa12.18□□□□□ -0.46
USP3-204ENST00000540797 IGHV1-69-2A0A0G2JMI3 117 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 TSTD3H0UI37 97 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 ZIC3O60481 467 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 FAM106CPP0CH98 169 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 ZNF708P17019 499 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 CEBPDP49716 269 aaPredicted RBP12.17□□□□□ -0.46
USP3-204ENST00000540797 CLCF1Q9UBD9 225 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 A0A1W2PP11 408 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 NPIPB13A6NJU9 1138 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 NPIPB4C9JG80 1138 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 NTN3O00634 580 aaPredicted RBP12.17□□□□□ -0.46
USP3-204ENST00000540797 LMX1BO60663 402 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 P2RY1P47900 373 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 COMMD1Q8N668 190 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 RSRP1Q9BUV0 290 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 G3V3Q6 166 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 J3QR06 171 aa12.17□□□□□ -0.46
USP3-204ENST00000540797 RAMP1O60894 148 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms