RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 OR10J5Q8NHC4 309 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 PLPPR1Q8TBJ4 325 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 TMEM37Q8WXS4 190 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 RBKSQ9H477 322 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 VAX2Q9UIW0 290 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF391Q9UJN7 358 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 TRAV39A0A0B4J263 110 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 A0A1W2PPQ1 181 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 A0A1W2PR80 420 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 PPP5D1E7EU14 171 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 C3orf80F5H4A9 247 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 H7BYZ3 331 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 SLC31A2O15432 143 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF737O75373 536 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 CD55P08174 381 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 EDN3P14138 238 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 MDH2P40926 338 aaKnown RBP9.64□□□□□ -0.87
SYNE1-237ENST00000539504 C16orf82Q7Z2V1 217 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF488Q96MN9 340 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 OCIAD1Q9NX40 245 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 ATG2AQ2TAZ0 1938 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 A0A1W2PQM1 296 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 SYNGR2O43760 224 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 CTXN2P0C2S0 81 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 HBG1P69891 147 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 HBG2P69892 147 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 PCOLCEQ15113 449 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 DMRTC2Q8IXT2 367 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-237ENST00000539504 RNF115Q9Y4L5 304 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 IGHV5-10-1A0A0J9YXX1 117 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 UBE2L5PA0A1B0GUS4 154 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 CBR3O75828 277 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 IGFBP4P22692 258 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 COL10A1Q03692 680 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 CA5BP1Q8WTZ4 195 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 OR51B6Q9H340 312 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 TCFL5Q9UL49 500 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 COL5A1P20908 1838 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-237ENST00000539504 C9J4A7 227 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 CD81P60033 236 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 TMEM241Q24JQ0 296 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 SF3B5Q9BWJ5 86 aaKnown RBP9.63□□□□□ -0.87
SYNE1-237ENST00000539504 PRSS50Q9UI38 385 aa9.63□□□□□ -0.87
SYNE1-237ENST00000539504 IGKV1-6A0A0C4DH72 117 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 RND2P52198 227 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 SSX7Q7RTT5 188 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 MRGPRGQ86SM5 289 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 MYPOPQ86VE0 399 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-237ENST00000539504 TMEM183AQ8IXX5 376 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 CLDN23Q96B33 292 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 MISP3Q96FF7 219 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF845Q96IR2 970 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-237ENST00000539504 RNF150Q9ULK6 438 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 ATP23Q9Y6H3 246 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 EML6Q6ZMW3 1958 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 TRAV1-1A0A0B4J248 108 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 C5orf49A4QMS7 147 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 WDR1O75083 606 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 DKK1O94907 266 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 P04436 131 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 GALR1P47211 349 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF726P1Q15940 193 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 BSXQ3C1V8 233 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 Q6ZRM9 215 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 MRPL41Q8IXM3 137 aaKnown RBP9.62□□□□□ -0.87
SYNE1-237ENST00000539504 OR10G4Q8NGN3 311 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 OR1P1Q8NH06 330 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 ABHD3Q8WU67 409 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 GPR35Q9HC97 309 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 NAT8Q9UHE5 227 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 TRBV24-1A0A075B6N3 115 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 ST8SIA5O15466 376 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 SYNGR1O43759 233 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 CLDN1O95832 211 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 AMBPP02760 352 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 SNRPCP09234 159 aaKnown RBP9.62□□□□□ -0.87
SYNE1-237ENST00000539504 TAS2R60P59551 318 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 FGF12P61328 243 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 SRYQ05066 204 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 ARL16Q0P5N6 197 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 WIPI1Q5MNZ9 446 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-237ENST00000539504 SLC23A3Q6PIS1 610 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 ZDHHC23Q8IYP9 409 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 OR10D3Q8NH80 312 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 TECTBQ96PL2 329 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 CTDSP1Q9GZU7 261 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 SLC25A22Q9H936 323 aa9.62□□□□□ -0.87
SYNE1-237ENST00000539504 TOX3O15405 576 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-237ENST00000539504 NAPSAO96009 420 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 RPS16P62249 146 aaKnown RBP9.61□□□□□ -0.87
SYNE1-237ENST00000539504 RTP5Q14D33 572 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 CPEB3Q8NE35 698 aaKnown RBP9.61□□□□□ -0.87
SYNE1-237ENST00000539504 OR4C12Q96R67 309 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 TMEM242Q9NWH2 141 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 MTCH1Q9NZJ7 389 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 OR2W1Q9Y3N9 320 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 CLEC18AA5D8T8 446 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 HLA-BQ31612 363 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF525Q8N782 197 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 CLEC18CQ8NCF0 446 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms