RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	MGMT	P16455	207 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	SRM	P19623	302 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	GDNF	P39905	211 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	PSMD7	P51665	324 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	RAB12	Q6IQ22	244 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	CEACAM19	Q7Z692	300 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	NDUFA11	Q86Y39	141 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	LINC00311	Q8N616	119 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	OR4F17	Q8NGA8	305 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	FAM110D	Q8TAY7	271 aa	Predicted RBP	7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	UFD1	Q92890	307 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	ORAI1	Q96D31	301 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	OR4F4	Q96R69	305 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	OCSTAMP	Q9BR26	566 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	SLC25A33	Q9BSK2	321 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	DUSP21	Q9H596	190 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	ETAA1	Q9NY74	926 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	RCC2	Q9P258	522 aa	Known RBP	7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	RSL24D1	Q9UHA3	163 aa	Known RBP	7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	CEPT1	Q9Y6K0	416 aa		7.69	□□□□□ -1.18
CHD7-208	ENST00000528280	FAM172BP	A6NC97	362 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	C15orf65	H3BRN8	121 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	SDCBP	O00560	298 aa	Predicted RBP	7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	PIN1P1	O15428	100 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	TXNL1	O43396	289 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	RGS10	O43665	173 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	SC5D	O75845	299 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	ARL6IP5	O75915	188 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	BPNT1	O95861	308 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	JUNB	P17275	347 aa	Predicted RBP	7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	SLC35A2	P78381	396 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	ZNF816	Q0VGE8	651 aa	Predicted RBP	7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	TPBG	Q13641	420 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	LTC4S	Q16873	150 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	HSD17B12	Q53GQ0	312 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	C1orf100	Q5SVJ3	147 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	SYT6	Q5T7P8	510 aa	Predicted RBP	7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	BAIAP2L2	Q6UXY1	529 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	GPR141	Q7Z602	305 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	LYPD6	Q86Y78	171 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	GAPT	Q8N292	157 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	OR5AU1	Q8NGC0	362 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	KCNG3	Q8TAE7	436 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	CCDC107	Q8WV48	283 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	NEDD4L	Q96PU5	975 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	TMED9	Q9BVK6	235 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	GFOD1	Q9NXC2	390 aa		7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	TET2	Q6N021	2002 aa	Predicted RBP	7.68	□□□□□ -1.18
CHD7-208	ENST00000528280	FGF16	O43320	207 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	PDCD6	O75340	191 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	RGS11	O94810	467 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	CD37	P11049	281 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	CD24	P25063	80 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	HTR2C	P28335	458 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	SSTR5	P35346	364 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	HES1	Q14469	280 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	IRF3	Q14653	427 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	ABCA11P	Q4W5N1	156 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	ZNF773	Q6PK81	442 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	PRSS48	Q7RTY5	328 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	WIPF2	Q8TF74	440 aa	Predicted RBP	7.67	□□□□□ -1.18
CHD7-208	ENST00000528280		Q96M66	194 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	BCL7B	Q9BQE9	202 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	RIMS4	Q9H426	269 aa	Predicted RBP	7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	BANF2	Q9H503	90 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	ACOT13	Q9NPJ3	140 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	GNG12	Q9UBI6	72 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	LSM2	Q9Y333	95 aa	Known RBP	7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	MOB4	Q9Y3A3	225 aa		7.67	□□□□□ -1.18
CHD7-208	ENST00000528280	TRAV39	A0A0B4J263	110 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280		A0A1W2PP11	408 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	CCDC160	A6NGH7	325 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	HSD17B6	O14756	317 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	TSPAN15	O95858	294 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	SNRNP70	P08621	437 aa	Known RBP	7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	UCHL1	P09936	223 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	HSMCR30	P0CW71	290 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	CD28	P10747	220 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	CPE	P16870	476 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	TMEM11	P17152	192 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	CRHBP	P24387	322 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	CD1B	P29016	333 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	GNG10	P50151	68 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	LOXL3	P58215	753 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	HTD2	P86397	168 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	CD83	Q01151	205 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	MLLT11	Q13015	90 aa	Predicted RBP	7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	EBI3	Q14213	229 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	HABP2	Q14520	560 aa	Predicted RBP	7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	LY6G6F	Q5SQ64	297 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	LIPK	Q5VXJ0	399 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	MOB3B	Q86TA1	216 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	LRRTM1	Q86UE6	522 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	DRAM1	Q8N682	238 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	C11orf44	Q8N8P7	122 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	TMEM104	Q8NE00	496 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	OR4X2	Q8NGF9	303 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	OR8H1	Q8NGG4	311 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	OR6M1	Q8NGM8	313 aa		7.66	□□□□□ -1.18
CHD7-208	ENST00000528280	OR2T10	Q8NGZ9	312 aa		7.66	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms