RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RTBDNQ9BSG5 229 aaPredicted RBP17.47■□□□□ 0.39
VPS28-208ENST00000527797 DCTN5Q9BTE1 182 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 FXYD6Q9H0Q3 95 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 ZNF69Q9UC07 566 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 SLC23A1Q9UHI7 598 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 ZNF221Q9UK13 617 aa17.47■□□□□ 0.39
VPS28-208ENST00000527797 TANC2Q9HCD6 1990 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 OVOL3O00110 214 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 SPINT2O43291 252 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 SSNA1O43805 119 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 CTSDP07339 412 aaPredicted RBP17.46■□□□□ 0.39
VPS28-208ENST00000527797 EFNA4P52798 201 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 AKAP14Q86UN6 197 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 OR52B4Q8NGK2 314 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 CHODLQ9H9P2 273 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 OR1A1Q9P1Q5 309 aa17.46■□□□□ 0.39
VPS28-208ENST00000527797 HEXAP06865 529 aa17.45■□□□□ 0.38
VPS28-208ENST00000527797 PI3P19957 117 aa17.45■□□□□ 0.38
VPS28-208ENST00000527797 ZBTB25P24278 435 aa17.45■□□□□ 0.38
VPS28-208ENST00000527797 TMEM33P57088 247 aa17.45■□□□□ 0.38
VPS28-208ENST00000527797 UBE2MP61081 183 aaKnown RBP17.45■□□□□ 0.38
VPS28-208ENST00000527797 CD276Q5ZPR3 534 aa17.45■□□□□ 0.38
VPS28-208ENST00000527797 LPCAT3Q6P1A2 487 aa17.45■□□□□ 0.38
VPS28-208ENST00000527797 SLC38A6Q8IZM9 456 aa17.45■□□□□ 0.38
VPS28-208ENST00000527797 ZNF431Q8TF32 576 aaPredicted RBP17.45■□□□□ 0.38
VPS28-208ENST00000527797 TRGV10A0A0A0MS01 117 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 C15orf65H3BRN8 121 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 PPIHO43447 177 aaKnown RBP17.44■□□□□ 0.38
VPS28-208ENST00000527797 SSTR5P35346 364 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 CEACAM6P40199 344 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 TMEM128Q5BJH2 165 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 AVPI1Q5T686 147 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 CTSZQ9UBR2 303 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 OR2W1Q9Y3N9 320 aa17.44■□□□□ 0.38
VPS28-208ENST00000527797 RAI1Q7Z5J4 1906 aaPredicted RBP17.44■□□□□ 0.38
VPS28-208ENST00000527797 MEX3AA1L020 520 aaKnown RBP17.43■□□□□ 0.38
VPS28-208ENST00000527797 DVL1O14640 695 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 PPP1R1AQ13522 171 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 ABCA11PQ4W5N1 156 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 FGFRL1Q8N441 504 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 RFESDQ8TAC1 157 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 NINJ1Q92982 152 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 CCL19Q99731 98 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 RAB9BQ9NP90 201 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 USP9XQ93008 2570 aaPredicted RBP17.43■□□□□ 0.38
VPS28-208ENST00000527797 UBR5O95071 2799 aaPredicted RBP17.43■□□□□ 0.38
VPS28-208ENST00000527797 hADV38S2A0JD32 116 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 NDUFS7O75251 213 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 CCNKO75909 580 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 HLA-AP01891 365 aaKnown RBP17.43■□□□□ 0.38
VPS28-208ENST00000527797 DHODHQ02127 395 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 MEF2CQ06413 473 aaPredicted RBP17.43■□□□□ 0.38
VPS28-208ENST00000527797 DHRS2Q13268 280 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 LYG2Q86SG7 212 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 IGFBPL1Q8WX77 278 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 CORO2AQ92828 525 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 TMEM230Q96A57 120 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 PPP1R14BQ96C90 147 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 RSRP1Q9BUV0 290 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 OR2S2Q9NQN1 319 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 RDH8Q9NYR8 311 aa17.43■□□□□ 0.38
VPS28-208ENST00000527797 CGB3P0DN86 165 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 CGB7P0DN87 165 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 VAMP1P23763 118 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 HTD2P86397 168 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 FCN2Q15485 313 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 TMEM155Q4W5P6 130 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 OR52L2PQ8NGH6 319 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 SECTM1Q8WVN6 248 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 ZNF486Q96H40 463 aaPredicted RBP17.42■□□□□ 0.38
VPS28-208ENST00000527797 SLC5A7Q9GZV3 580 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 CALYQ9NYX4 217 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 MYO18BQ8IUG5 2567 aa17.42■□□□□ 0.38
VPS28-208ENST00000527797 DSCAMO60469 2012 aa17.41■□□□□ 0.38
VPS28-208ENST00000527797 FAM208BQ5VWN6 2430 aa17.41■□□□□ 0.38
VPS28-208ENST00000527797 C9orf170A2RU37 121 aa17.41■□□□□ 0.38
VPS28-208ENST00000527797 RPL31P62899 125 aaKnown RBP17.41■□□□□ 0.38
VPS28-208ENST00000527797 OR10V1Q8NGI7 309 aa17.41■□□□□ 0.38
VPS28-208ENST00000527797 H1FXQ92522 213 aaKnown RBP17.41■□□□□ 0.38
VPS28-208ENST00000527797 TOLLIPQ9H0E2 274 aa17.41■□□□□ 0.38
VPS28-208ENST00000527797 LPAR3Q9UBY5 353 aa17.41■□□□□ 0.38
VPS28-208ENST00000527797 MIOXQ9UGB7 285 aa17.41■□□□□ 0.38
VPS28-208ENST00000527797 IGKV1D-13A0A0B4J2D9 117 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 KBTBD11-OT1A0A1B0GTJ5 212 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 ZNF729A6NN14 1252 aaPredicted RBP17.4■□□□□ 0.38
VPS28-208ENST00000527797 FCN3O75636 299 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 IGKV1-13P0DP09 117 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 LUMP51884 338 aaPredicted RBP17.4■□□□□ 0.38
VPS28-208ENST00000527797 PIGPP57054 158 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 C12orf45Q8N5I9 185 aaPredicted RBP17.4■□□□□ 0.38
VPS28-208ENST00000527797 SPICQ8N5J4 248 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 CLN8Q9UBY8 286 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 UBE2J1Q9Y385 318 aaPredicted RBP17.4■□□□□ 0.38
VPS28-208ENST00000527797 RBM7Q9Y580 266 aaKnown RBP17.4■□□□□ 0.38
VPS28-208ENST00000527797 LINC00312Q9Y6C7 94 aa17.4■□□□□ 0.38
VPS28-208ENST00000527797 TEX13DA0A0J9YY54 714 aaPredicted RBP17.39■□□□□ 0.38
VPS28-208ENST00000527797 SFT2D2O95562 160 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 SULT1A3P0DMM9 295 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 SULT1A4P0DMN0 295 aa17.39■□□□□ 0.38
VPS28-208ENST00000527797 RPS2P15880 293 aaKnown RBP17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms