RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 BAIAP2L2Q6UXY1 529 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 HEPN1Q6WQI6 88 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 RTN4RL2Q86UN3 420 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 LAX1Q8IWV1 398 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 Q8N7P7 452 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 OR10A7Q8NGE5 316 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 OR13D1Q8NGV5 346 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 LHX4Q969G2 390 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 UPRTQ96BW1 309 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 GALMQ96C23 342 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 HDHD3Q9BSH5 251 aaPredicted RBP8.44□□□□□ -1.06
SKA1-204ENST00000488454 ST6GALNAC5Q9BVH7 336 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 NXF2Q9GZY0 626 aaKnown RBP8.44□□□□□ -1.06
SKA1-204ENST00000488454 TAF9BQ9HBM6 251 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 Q9N2K0 584 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 SIRT7Q9NRC8 400 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 MBNL3Q9NUK0 354 aaKnown RBP8.44□□□□□ -1.06
SKA1-204ENST00000488454 IDI2-AS1Q9NZ38 188 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 RABL2AQ9UBK7 228 aaPredicted RBP8.44□□□□□ -1.06
SKA1-204ENST00000488454 CDC42EP3Q9UKI2 254 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 RABL2BQ9UNT1 228 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 SESN1Q9Y6P5 492 aa8.44□□□□□ -1.06
SKA1-204ENST00000488454 ABCA1O95477 2261 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 FLNAP21333 2647 aaKnown RBP8.43□□□□□ -1.06
SKA1-204ENST00000488454 FABP12A6NFH5 140 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 TRDCB7Z8K6 153 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 C12orf77C9JDV5 145 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 NPIPB11E5RHQ5 1161 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 HBZP02008 142 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 FCGR3AP08637 254 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 CGB3P0DN86 165 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 CGB7P0DN87 165 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 OMGP23515 440 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 DTYMKP23919 212 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 FPR2P25090 351 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 SSTR5P35346 364 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 KIR2DS4P43632 304 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 BPIFB3P59826 476 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 SCGB2A2Q13296 93 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 KIR2DS1Q14954 304 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 SRSF7Q16629 238 aaKnown RBP eCLIP8.43□□□□□ -1.06
SKA1-204ENST00000488454 CNPY1Q3B7I2 92 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 TMEM30BQ3MIR4 351 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 PRAMEF5Q5TYX0 476 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 ZNF880Q6PDB4 577 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 CNIH2Q6PI25 160 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 ZNF782Q6ZMW2 699 aaPredicted RBP8.43□□□□□ -1.06
SKA1-204ENST00000488454 TCF23Q7RTU1 214 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 SNX29P2Q8IUI4 249 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 C11orf42Q8N5U0 333 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 NUDCD2Q8WVJ2 157 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 TBX15Q96SF7 602 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 MIXL1Q9H2W2 232 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 UNKLQ9H9P5 680 aaKnown RBP8.43□□□□□ -1.06
SKA1-204ENST00000488454 IFT46Q9NQC8 304 aa8.43□□□□□ -1.06
SKA1-204ENST00000488454 ELF5Q9UKW6 265 aaPredicted RBP8.43□□□□□ -1.06
SKA1-204ENST00000488454 CSPG4Q6UVK1 2322 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 CENPVL3A0A0U1RRI6 287 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 INAFM1C9JVW0 142 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 C15orf65H3BRN8 121 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 SDCBPO00560 298 aaPredicted RBP8.42□□□□□ -1.06
SKA1-204ENST00000488454 TOR1AO14656 332 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 IGLV1-40P01703 118 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 HLA-DQB1P01920 261 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 COX7A1P24310 79 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 TNFSF8P32971 234 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 UBE2E1P51965 193 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 PRRX1P54821 245 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 LGALS4P56470 323 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 HLA-DRB3P79483 266 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 MADCAM1Q13477 382 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 IL18Q14116 193 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 HMGN3Q15651 99 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 CHRFAM7AQ494W8 412 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 PDZD9Q8IXQ8 264 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 ABHD12Q8N2K0 398 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 PNKDQ8N490 385 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 OR52M1Q8NGK5 317 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 OR1L1Q8NH94 360 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 IL1F10Q8WWZ1 152 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 CYYR1Q96J86 154 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 SUCNR1Q9BXA5 334 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 MS4A7Q9GZW8 240 aaPredicted RBP8.42□□□□□ -1.06
SKA1-204ENST00000488454 TMEM133Q9H2Q1 129 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 LINC00574Q9H8X3 128 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 ZNF286AQ9HBT8 521 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 OR2S2Q9NQN1 319 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 GNG12Q9UBI6 72 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 ZNF230Q9UIE0 474 aaPredicted RBP8.42□□□□□ -1.06
SKA1-204ENST00000488454 NUP50Q9UKX7 468 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 DOCK11Q5JSL3 2073 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 ACANP16112 2415 aa8.42□□□□□ -1.06
SKA1-204ENST00000488454 ZNF469Q96JG9 3925 aaPredicted RBP8.42□□□□□ -1.06
SKA1-204ENST00000488454 ARHGAP32A7KAX9 2087 aa8.41□□□□□ -1.06
SKA1-204ENST00000488454 IGHV3OR16-10A0A075B7F0 116 aa8.41□□□□□ -1.06
SKA1-204ENST00000488454 TRAV40A0A0B4J280 105 aa8.41□□□□□ -1.06
SKA1-204ENST00000488454 IGHV1-69DA0A0B4J2H0 117 aa8.41□□□□□ -1.06
SKA1-204ENST00000488454 SCO2A0A1W2PP80 73 aa8.41□□□□□ -1.06
SKA1-204ENST00000488454 A0A1W2PRD5 423 aa8.41□□□□□ -1.06
SKA1-204ENST00000488454 A0A1W2PRF3 423 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms