RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CASQ2O14958 399 aaPredicted RBP13.17□□□□□ -0.3
USP40-212ENST00000473191 ZNF780AO75290 641 aaPredicted RBP13.17□□□□□ -0.3
USP40-212ENST00000473191 WNT4P56705 351 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 ZNF816Q0VGE8 651 aaPredicted RBP13.17□□□□□ -0.3
USP40-212ENST00000473191 RAB12Q6IQ22 244 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 SLC16A12Q6ZSM3 486 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 OR8H3Q8N146 312 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 STX19Q8N4C7 294 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 ZNF439Q8NDP4 499 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 MRAPQ8TCY5 172 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 FAM46BQ96A09 425 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 EAF1Q96JC9 268 aaPredicted RBP13.17□□□□□ -0.3
USP40-212ENST00000473191 SELENOIQ9C0D9 397 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 KCNK15Q9H427 330 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 PCDHB16Q9NRJ7 776 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 PLCXD1Q9NUJ7 323 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 NECAP2Q9NVZ3 263 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 PAK1IP1Q9NWT1 392 aaPredicted RBP13.17□□□□□ -0.3
USP40-212ENST00000473191 ETAA1Q9NY74 926 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 CKLFQ9UBR5 152 aa13.17□□□□□ -0.3
USP40-212ENST00000473191 NKX1-2Q9UD57 310 aaPredicted RBP13.17□□□□□ -0.3
USP40-212ENST00000473191 NOTCH3Q9UM47 2321 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 UBE2QL1A1L167 161 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 M0QZK8 103 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 MYL12BO14950 172 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 ORC5O43913 435 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 PF4P02776 101 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 MGMTP16455 207 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 KRTAP10-11P60412 298 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 EBI3Q14213 229 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 OR10K2Q6IF99 312 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 Q8N6K4 173 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 OR52M1Q8NGK5 317 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 RTN4IP1Q8WWV3 396 aaPredicted RBP13.16□□□□□ -0.3
USP40-212ENST00000473191 C8orf4Q9NR00 106 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 TRAPPC2LQ9UL33 140 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 PEX16Q9Y5Y5 336 aa13.16□□□□□ -0.3
USP40-212ENST00000473191 MCRIP1C9JLW8 97 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 CRTAPO75718 401 aaPredicted RBP13.15□□□□□ -0.3
USP40-212ENST00000473191 HBZP02008 142 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 GAPDHP04406 335 aaKnown RBP13.15□□□□□ -0.3
USP40-212ENST00000473191 TAS2R43P59537 309 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 MED21Q13503 144 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 GNMTQ14749 295 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 CT45A1Q5HYN5 189 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 LCNL1Q6ZST4 164 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 GAPTQ8N292 157 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 LINC00311Q8N616 119 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 Q8N9W7 124 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 CT45A3Q8NHU0 189 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 TFAP2CQ92754 450 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 Q96M66 194 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 PLSCR3Q9NRY6 295 aa13.15□□□□□ -0.3
USP40-212ENST00000473191 SERPINE3A8MV23 424 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 FGF16O43320 207 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 IGHG2P01859 326 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 F2RL1P55085 397 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 GPR176Q14439 515 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 C8orf86Q6ZUL3 223 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 LRRTM1Q86UE6 522 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 LINC00482Q8N8I6 264 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 OR52L2PQ8NGH6 319 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 MRPL30Q8TCC3 161 aaKnown RBP13.14□□□□□ -0.31
USP40-212ENST00000473191 DUX3Q96PT4 197 aa13.14□□□□□ -0.31
USP40-212ENST00000473191 NCBP2LA6PVI3 153 aaKnown RBP13.13□□□□□ -0.31
USP40-212ENST00000473191 SC5DO75845 299 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 MPIG6BO95866 241 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 CD1AP06126 327 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 CDK1P06493 297 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 HOXD3P31249 432 aaPredicted RBP13.13□□□□□ -0.31
USP40-212ENST00000473191 RPL23AP62750 156 aaKnown RBP13.13□□□□□ -0.31
USP40-212ENST00000473191 ACSM3Q53FZ2 586 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 UNQ9370/PRO34162Q6UXP9 181 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 SLC25A48Q6ZT89 311 aaKnown RBP13.13□□□□□ -0.31
USP40-212ENST00000473191 OR2W3Q7Z3T1 314 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 REC114Q7Z4M0 266 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 SLC35E3Q7Z769 313 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 MRPL41Q8IXM3 137 aaKnown RBP13.13□□□□□ -0.31
USP40-212ENST00000473191 IZUMO1Q8IYV9 350 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 STPG2Q8N412 459 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 C8orf31Q8N9H6 132 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 NRG4Q8WWG1 115 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 MRPS24Q96EL2 167 aaKnown RBP13.13□□□□□ -0.31
USP40-212ENST00000473191 HSPB9Q9BQS6 159 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 TMED9Q9BVK6 235 aa13.13□□□□□ -0.31
USP40-212ENST00000473191 LSM2Q9Y333 95 aaKnown RBP13.13□□□□□ -0.31
USP40-212ENST00000473191 PTGES3LE9PB15 166 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 K7EIL1 84 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 NKAPLQ5M9Q1 402 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 CDH26Q8IXH8 852 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 ODF3L1Q8IXM7 274 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 RITA1Q96K30 269 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 SULT4A1Q9BR01 284 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 NICN1Q9BSH3 213 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 TAF9BQ9HBM6 251 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 SPACA1Q9HBV2 294 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 MBNL3Q9NUK0 354 aaKnown RBP13.12□□□□□ -0.31
USP40-212ENST00000473191 GNG12Q9UBI6 72 aa13.12□□□□□ -0.31
USP40-212ENST00000473191 WI2-2373I1.2A0A1W2PRP0 233 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 VSIG8P0DPA2 414 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms