RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 OR52M1Q8NGK5 317 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 SGCDQ92629 289 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 TFAP2CQ92754 450 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 MRPS24Q96EL2 167 aaKnown RBP12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 NECAP2Q9NVZ3 263 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 AURKAIP1Q9NWT8 199 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 TSSC4Q9Y5U2 329 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 PEX16Q9Y5Y5 336 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 IGHV1-3A0A0C4DH29 117 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 C12orf77C9JDV5 145 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 PTGES3LE9PB15 166 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 PF4P02776 101 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 GAPDHP04406 335 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 CDK1P06493 297 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 CD33P20138 364 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 LOXL3P58215 753 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 ZNF816Q0VGE8 651 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM27D1Q5T7N8 215 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 THRSPQ92748 146 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM46BQ96A09 425 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 CYYR1Q96J86 154 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 TMED9Q9BVK6 235 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 MND1Q9BWT6 205 aa12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 NKX1-2Q9UD57 310 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-205ENST00000472524 UBE2QL1A1L167 161 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 PSMB11A5LHX3 300 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 SLC31A2O15432 143 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 SPINT2O43291 252 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 IL3RAP26951 378 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 GPR50Q13585 617 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 ACSM3Q53FZ2 586 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 C6orf183Q5T699 404 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 ZNF329Q86UD4 541 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 LYPD6Q86Y78 171 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 LINC00311Q8N616 119 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 OR10V1Q8NGI7 309 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 OR1L1Q8NH94 360 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 PHF21AQ96BD5 680 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 Q96M66 194 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 NOL4LQ96MY1 436 aaPredicted RBP12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 UQCC2Q9BRT2 126 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 DCLRE1BQ9H816 532 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 GNG12Q9UBI6 72 aa12.46□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A10PA6NDY2 464 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 FAM90A7PA6NKC0 464 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 FAM90A23PA8MXZ1 464 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 FGF16O43320 207 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 MPIG6BO95866 241 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 HBZP02008 142 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 RCC1P18754 421 aaPredicted RBP12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 AQP4P55087 323 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 NKAPLQ5M9Q1 402 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 RBM48Q5RL73 367 aaKnown RBP12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 C6orf141Q5SZD1 244 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 SIGIRRQ6IA17 410 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 RTN4IP1Q8WWV3 396 aaPredicted RBP12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 RAB9BQ9NP90 201 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 SCN3BQ9NY72 215 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 LINC00527Q9UJ94 153 aa12.45□□□□□ -0.42
CCDC88B-205ENST00000472524 NCBP2LA6PVI3 153 aaKnown RBP12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 SERPINE3A8MV23 424 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 IGLL1P15814 213 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 FUT3P21217 361 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 SPHARQ15513 63 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 MED22Q15528 200 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 FOXB2Q5VYV0 432 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 OR10K2Q6IF99 312 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 TRAT1Q6PIZ9 186 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 UNQ9370/PRO34162Q6UXP9 181 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 SLC35E3Q7Z769 313 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 IZUMO1Q8IYV9 350 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 MS4A15Q8N5U1 240 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 C8orf31Q8N9H6 132 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 EAF1Q96JC9 268 aaPredicted RBP12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 CST11Q9H112 138 aa12.44□□□□□ -0.42
CCDC88B-205ENST00000472524 H0YHG0 523 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 PDCD6O75340 191 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 CA11O75493 328 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 SC5DO75845 299 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 GP2P55259 537 aaKnown RBP12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 EBI3Q14213 229 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 Q3ZCU0 254 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 RNLSQ5VYX0 342 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 SLC25A48Q6ZT89 311 aaKnown RBP12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 C5orf24Q7Z6I8 188 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 LRRTM1Q86UE6 522 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 GAPTQ8N292 157 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 ZNF439Q8NDP4 499 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 OR2T10Q8NGZ9 312 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 CHPT1Q8WUD6 406 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 NRG4Q8WWG1 115 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 ST6GALNAC6Q969X2 333 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 RBMXL1Q96E39 390 aaKnown RBP12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 KCNK15Q9H427 330 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 TAF9BQ9HBM6 251 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 GHRLQ9UBU3 117 aa12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 LSM2Q9Y333 95 aaKnown RBP12.43□□□□□ -0.42
CCDC88B-205ENST00000472524 NBEAL2Q6ZNJ1 2754 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 ZNF736B4DX44 427 aaPredicted RBP12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 GLAP06280 429 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms