RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 LIAT1Q6ZQX7 453 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ZNF383Q8NA42 475 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ADRA2AP08913 450 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 WNT3P56703 355 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 HPXP02790 462 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TOMM34Q15785 309 aaPredicted RBP11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 FAM24BQ8N5W8 94 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SNRNP40Q96DI7 357 aaKnown RBP11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 CORTO00230 105 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 HAND1O96004 215 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PNLIPP16233 465 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SUMO3P55854 103 aaPredicted RBP11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ANKRD55Q3KP44 614 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 C1orf162Q8NEQ5 155 aaPredicted RBP11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 OR8G5Q8NG78 346 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PRELID3AQ96N28 172 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TOLLIPQ9H0E2 274 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 DOCK2Q92608 1830 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SLC17A2O00624 439 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PGA3P0DJD8 388 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 HOXB3P14651 431 aaPredicted RBP11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 C16orf82Q7Z2V1 217 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 OR52M1Q8NGK5 317 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 NEU1Q99519 415 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 HEXA-AS1Q9H8Q6 139 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PDFQ9HBH1 243 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 YBX2Q9Y2T7 364 aaKnown RBP11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SIGLEC1Q9BZZ2 1709 aa11.67□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 CACNA1HO95180 2353 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 HOXD3P31249 432 aaPredicted RBP11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 GZMKP49863 264 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ZBTB37Q5TC79 503 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ZNF880Q6PDB4 577 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TCTEX1D1Q8N7M0 179 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 A6NDN8 102 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 C16orf97H3BN30 126 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 COTL1Q14019 142 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PTOV1Q86YD1 416 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TMED3Q9Y3Q3 217 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 MBTPS2O43462 519 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ALX3O95076 343 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 INHBBP09529 407 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 CSF2RBP32927 897 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ASB13Q8WXK3 278 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TMEM30AQ9NV96 361 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 WNT16Q9UBV4 365 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SELENOPP49908 381 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TMEM229BQ8NBD8 167 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ARHGAP32A7KAX9 2087 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 WNT9BO14905 357 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 STAG3L3P0CL85 134 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 HIST1H1DP16402 221 aaKnown RBP11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 RPL31P62899 125 aaKnown RBP11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 GABRA6Q16445 453 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 NRN1LQ496H8 165 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SAMD13Q5VXD3 122 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 COL25A1Q9BXS0 654 aaPredicted RBP11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 M0R143 59 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 FAM157CP0CG43 387 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 MPV17LQ2QL34 196 aa11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SLC25A10Q9UBX3 287 aaPredicted RBP11.66□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SLC25A53Q5H9E4 307 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 SYS1Q8N2H4 156 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 RAB40CQ96S21 281 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 CDCA4Q9BXL8 241 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 NTMQ9P121 344 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 FOXJ3Q9UPW0 622 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 CBLN3Q6UW01 205 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 LHBP01229 141 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PPP1R1AQ13522 171 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 FAHD1Q6P587 224 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 OR10AC1Q8NH08 325 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 DNASE2BQ8WZ79 361 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 RAX2Q96IS3 184 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PET117Q6UWS5 81 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 MRGPRX3Q96LB0 322 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TNFRSF12AQ9NP84 129 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TBX21Q9UL17 535 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 BCL2L11O43521 198 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 PDE6DO43924 150 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 LGALS3P17931 250 aaKnown RBP11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 MDH2P40926 338 aaKnown RBP11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TMEM95Q3KNT9 176 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 ZNF680Q8NEM1 530 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 C2orf88Q9BSF0 95 aa11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 TBL2Q9Y4P3 447 aaKnown RBP11.65□□□□□ -0.54
NPHP3-ACAD11-201ENST00000471702 A0A1B0GU03 582 aa11.65□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 NTNG2Q96CW9 530 aa11.65□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 USF3Q68DE3 2245 aa11.65□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 VSTM2AQ8TAG5 236 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 GUCD1Q96NT3 240 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 PRRX2Q99811 253 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 GPR6P46095 362 aaPredicted RBP11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 TPRX1Q8N7U7 411 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 NT5CQ8TCD5 201 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 ADAT3Q96EY9 351 aaPredicted RBP11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 FAM60AQ9NP50 221 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 NAT2P11245 290 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 SLC6A1P30531 599 aa11.64□□□□□ -0.55
NPHP3-ACAD11-201ENST00000471702 KRTCAP3Q53RY4 240 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms