RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 PRAMEF6Q5VXH4 476 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 LYG2Q86SG7 212 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 RTN4RL2Q86UN3 420 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 FAM185AQ8N0U4 392 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 LRRC29Q8WV35 223 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 MITD1Q8WV92 249 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 MOB3AQ96BX8 217 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 ZNF488Q96MN9 340 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 WDR13Q9H1Z4 485 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 RANBP3Q9H6Z4 567 aaPredicted RBP9.83□□□□□ -0.84
USP54-209ENST00000464635 RAB9BQ9NP90 201 aa9.83□□□□□ -0.84
USP54-209ENST00000464635 IGKV1D-8A0A087WSZ0 117 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 TRBV6-7A0A0A0MS04 114 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 IGHV4-61A0A0C4DH41 118 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 TMEM30CPA0ZSE6 113 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 SSNA1O43805 119 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 B3GALNT1O75752 331 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 C1QBP02746 253 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 GIPP09681 153 aaPredicted RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 PSG2P11465 335 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 ANXA7P20073 488 aaKnown RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 GZMHP20718 246 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 PRDX2P32119 198 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 PPOXP50336 477 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 SLC38A6Q8IZM9 456 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 ZNF561Q8N587 486 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 C12orf45Q8N5I9 185 aaPredicted RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 DRAXINQ8NBI3 349 aaPredicted RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 ITLN1Q8WWA0 313 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 GALNT14Q96FL9 552 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 SDSLQ96GA7 329 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 HYLS1Q96M11 299 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 ZNF2Q9BSG1 426 aaPredicted RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 RTBDNQ9BSG5 229 aaPredicted RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 HDHD3Q9BSH5 251 aaPredicted RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 PIMREGQ9BSJ6 248 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 BPESC1Q9GZL8 116 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 C5orf66Q9H5L9 145 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 CHMP1AQ9HD42 196 aaPredicted RBP9.82□□□□□ -0.84
USP54-209ENST00000464635 ZNF581Q9P0T4 197 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 IL36RNQ9UBH0 155 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 ZNF222Q9UK12 451 aa9.82□□□□□ -0.84
USP54-209ENST00000464635 hCG_1807616A0A1W2PRN6 198 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 C9orf170A2RU37 121 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 OOEPA6NGQ2 149 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 OR5H14A6NHG9 310 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 RFPL4AA6NLU0 287 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 RFPL4AL1F8VTS6 287 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.81□□□□□ -0.84
USP54-209ENST00000464635 MGST3O14880 152 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 SPRY3O43610 288 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 NDUFA2O43678 99 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 ZNF737O75373 536 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 IRF2P14316 349 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 RAP2BP61225 183 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 RND3P61587 244 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 IL13RA1P78552 427 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 HLA-DRB3P79483 266 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 MRPS11P82912 194 aaKnown RBP9.81□□□□□ -0.84
USP54-209ENST00000464635 CBX3Q13185 183 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 DHRS2Q13268 280 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 FCN2Q15485 313 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 HMGN3Q15651 99 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 TMEM30BQ3MIR4 351 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 C4orf46Q504U0 113 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 C6orf183Q5T699 404 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 CYB5R2Q6BCY4 276 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 ZNF826PQ6ZT77 177 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 IL17RELQ6ZVW7 336 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 KCTD9Q7L273 389 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 MUC20Q8N307 709 aaPredicted RBP9.81□□□□□ -0.84
USP54-209ENST00000464635 OR2AK2Q8NG84 335 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 OR11H7Q8NGC8 314 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 ANGPTL6Q8NI99 470 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 MARCH1Q8TCQ1 289 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 NEK7Q8TDX7 302 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 RDH5Q92781 318 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 PHB2Q99623 299 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 RSRP1Q9BUV0 290 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 SHARPINQ9H0F6 387 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 CHODLQ9H9P2 273 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 PPP1R3CQ9UQK1 317 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 C14orf166Q9Y224 244 aaKnown RBP9.81□□□□□ -0.84
USP54-209ENST00000464635 DYSFO75923 2080 aa9.81□□□□□ -0.84
USP54-209ENST00000464635 TRAV38-1A0A0B4J264 116 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 DBX1A6NMT0 343 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 LYNX1G3V0Z9 82 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 K7N7A8 449 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 NDUFS8O00217 210 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 PSPNO60542 156 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 SFT2D2O95562 160 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 LYNX1P0DP58 116 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 DUSP1P28562 367 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 GZMKP49863 264 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 PDCD1Q15116 288 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 ZFP69Q49AA0 526 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 LY6G6FQ5SQ64 297 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 BRICD5Q6PL45 260 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 Q6ZPA2 131 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 C17orf107Q6ZR85 190 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms