RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 FIP1L1Q6UN15 594 aaKnown RBP12.75□□□□□ -0.37
LDLR-202ENST00000455727 TMEM252Q8N6L7 170 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 OR8G5Q8NG78 346 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 OR8U1Q8NH10 309 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 TAAR3PQ9P1P4 343 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 TRAPPC2LQ9UL33 140 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.74□□□□□ -0.37
LDLR-202ENST00000455727 IGSF23A1L1A6 192 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 FAM157AC9JC47 383 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 TNFSF12O43508 249 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 TSPAN15O95858 294 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 LMO1P25800 156 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 BAXQ07812 192 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 HMGN3Q15651 99 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 DHRS7BQ6IAN0 325 aaPredicted RBP12.74□□□□□ -0.37
LDLR-202ENST00000455727 VWA1Q6PCB0 445 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 IL1F10Q8WWZ1 152 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 OBP2BQ9NPH6 170 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 OR1A1Q9P1Q5 309 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 PROB1E7EW31 1015 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 SSSCA1O60232 199 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 IGLV2-14P01704 120 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 HEXAP06865 529 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 SERPINE2P07093 398 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 SNCAP37840 140 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 MPV17P39210 176 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 ACSF3Q4G176 576 aaPredicted RBP12.74□□□□□ -0.37
LDLR-202ENST00000455727 RNF115Q9Y4L5 304 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 ZNF318Q5VUA4 2279 aa12.74□□□□□ -0.37
LDLR-202ENST00000455727 H0YL77 283 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 GRPP07492 148 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 SFTA3P0C7M3 94 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 KITLGP21583 273 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 CD80P33681 288 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 ID4P47928 161 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 C1orf174Q8IYL3 243 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 LSM10Q969L4 123 aaKnown RBP12.73□□□□□ -0.37
LDLR-202ENST00000455727 TTC28Q96AY4 2481 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 MLNRO43193 412 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 HAND1O96004 215 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 IGLV1-44P01699 117 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 CAMLGP49069 296 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 MIDNQ504T8 468 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 HSD17B11Q8NBQ5 300 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 MAGT1Q9H0U3 335 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 SH3BGRL3Q9H299 93 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 CXXC4Q9H2H0 198 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 C19orf12Q9NSK7 152 aa12.73□□□□□ -0.37
LDLR-202ENST00000455727 ZNF891A8MT65 544 aaPredicted RBP12.72□□□□□ -0.37
LDLR-202ENST00000455727 AGPAT2O15120 278 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 CHST1O43916 411 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 WDR1O75083 606 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 AGFG2O95081 481 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 CD200P41217 278 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 DEFB109BQ30KR1 87 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 C11orf53Q8IXP5 236 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 SNIP1Q8TAD8 396 aaKnown RBP12.72□□□□□ -0.37
LDLR-202ENST00000455727 GPR146Q96CH1 333 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 SCRT1Q9BWW7 348 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 BCL2L14Q9BZR8 327 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 TINAGQ9UJW2 476 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 FRYQ5TBA9 3013 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 UMAD1C9J7I0 102 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 WRBO00258 174 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 HSPA12AO43301 675 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 TMEM50AO95807 157 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 PSG2P11465 335 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 FOXF2Q12947 444 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 P2RY6Q15077 328 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 ODF3L1Q8IXM7 274 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 FAM169BQ8N8A8 192 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 OR51H1Q8NH63 302 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 PARP12Q9H0J9 701 aaKnown RBP12.72□□□□□ -0.37
LDLR-202ENST00000455727 DKK4Q9UBT3 224 aa12.72□□□□□ -0.37
LDLR-202ENST00000455727 TRAV39A0A0B4J263 110 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 KIAA1324LA8MWY0 1029 aaPredicted RBP12.71□□□□□ -0.37
LDLR-202ENST00000455727 C9JQL5 133 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 K7N7A8 449 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 PRH1P02810 166 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 CECR9P0C854 216 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 PAX9P55771 341 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 ZNF616Q08AN1 781 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 PEA15Q15121 130 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 PRR7Q8TB68 274 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 TMEM171Q8WVE6 324 aa12.71□□□□□ -0.37
LDLR-202ENST00000455727 ZNF71Q9NQZ8 489 aaPredicted RBP12.71□□□□□ -0.37
LDLR-202ENST00000455727 A0A0G2JRQ6 117 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 A0A1B0GWJ7 208 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 TMEM30CPA0ZSE6 113 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 TNFSF13O75888 250 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 CGAP01215 116 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 NPBWR1P48145 328 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 CLINT1Q14677 625 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 SLC35E4Q6ICL7 350 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 LFNGQ8NES3 379 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 OR5C1Q8NGR4 320 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 RAB40CQ96S21 281 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 LIN7CQ9NUP9 197 aaKnown RBP12.71□□□□□ -0.38
LDLR-202ENST00000455727 KCNIP1Q9NZI2 227 aa12.71□□□□□ -0.38
LDLR-202ENST00000455727 NDRG3Q9UGV2 375 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms