RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TIMP4Q99727 224 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 LRRC61Q9BV99 259 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 SPNS2Q8IVW8 549 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 LHX9Q9NQ69 397 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 C19orf53Q9UNZ5 99 aaPredicted RBP11.69□□□□□ -0.54
USP40-208ENST00000450966 SEC11AP67812 179 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 RPL18Q07020 188 aaKnown RBP11.69□□□□□ -0.54
USP40-208ENST00000450966 EDDM3AQ14507 147 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 OR10V1Q8NGI7 309 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 DUSP15Q9H1R2 295 aaPredicted RBP11.69□□□□□ -0.54
USP40-208ENST00000450966 TMEM30AQ9NV96 361 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 TECRQ9NZ01 308 aaKnown RBP11.69□□□□□ -0.54
USP40-208ENST00000450966 CACNG5Q9UF02 275 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 KBTBD11O94819 623 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 ERHP84090 104 aaKnown RBP11.68□□□□□ -0.54
USP40-208ENST00000450966 MMDQ15546 238 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 GFRALQ6UXV0 394 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 POC1AQ8NBT0 407 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 ST6GALNAC3Q8NDV1 305 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 TBL2Q9Y4P3 447 aaKnown RBP11.68□□□□□ -0.54
USP40-208ENST00000450966 GRIFINA4D1Z8 144 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 P01737 135 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 PPP1CCP36873 323 aaKnown RBP11.68□□□□□ -0.54
USP40-208ENST00000450966 CXCL16Q9H2A7 254 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 TIMM9Q9Y5J7 89 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 ATP23Q9Y6H3 246 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 COL5A3P25940 1745 aaPredicted RBP11.68□□□□□ -0.54
USP40-208ENST00000450966 TRGV8A0A0C4DH27 118 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 A8MWP6 167 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 CDC14BO60729 498 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 MYOZ3Q8TDC0 251 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 PTX4Q96A99 478 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 IGHV3-20A0A0C4DH32 117 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 SRIP30626 198 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 SSPNQ14714 243 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 AGERQ15109 404 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 GAB4Q2WGN9 574 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 OR4X1Q8NH49 305 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 OR2V1Q8NHB1 315 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 ABHD14BQ96IU4 210 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 SSBP4Q9BWG4 385 aaPredicted RBP11.68□□□□□ -0.54
USP40-208ENST00000450966 ST3GAL6Q9Y274 331 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 LY75O60449 1722 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 TRBV5-4A0A0C4DH59 114 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 UMODP07911 640 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 MC5RP33032 325 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 MFAP2P55001 183 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 DLX1P56177 255 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 KHDC1LQ5JSQ8 128 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 POLDIP2Q9Y2S7 368 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 R4GN57 208 aa11.68□□□□□ -0.54
USP40-208ENST00000450966 C1QTNF9BB2RNN3 333 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 PMELP40967 661 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 CDKN1BP46527 198 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 METAP1P53582 386 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 TCTN1Q2MV58 587 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 Q6ZS52 159 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 ANKRD37Q7Z713 158 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 SELENOHQ8IZQ5 122 aaKnown RBP11.67□□□□□ -0.54
USP40-208ENST00000450966 RSPO3Q9BXY4 272 aaPredicted RBP11.67□□□□□ -0.54
USP40-208ENST00000450966 WNT10AQ9GZT5 417 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 DEFB127Q9H1M4 99 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 CLEC5AQ9NY25 188 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 PRR13Q9NZ81 148 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 TIMM10BQ9Y5J6 103 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 TRAV9-1A0A075B6T8 112 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 EREGO14944 169 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 AMMECR1LQ6DCA0 310 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 YRDCQ86U90 279 aaKnown RBP11.67□□□□□ -0.54
USP40-208ENST00000450966 FAM219AQ8IW50 185 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 NEUROG1Q92886 237 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 TXNIPQ9H3M7 391 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 RBKSQ9H477 322 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 B9D1Q9UPM9 204 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 PPIL1Q9Y3C6 166 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 C1QL1O75973 258 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 CISD3P0C7P0 127 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 CLDN15P56746 228 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 GTSF1LQ9H1H1 148 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 FNDC4Q9H6D8 234 aaPredicted RBP11.67□□□□□ -0.54
USP40-208ENST00000450966 LRP12Q9Y561 859 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 CRYAAP02489 173 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 ZGLP1P0C6A0 271 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 SELLP14151 372 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 GPR183P32249 361 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 LRRC75AQ8NAA5 344 aa11.67□□□□□ -0.54
USP40-208ENST00000450966 GAGE2BQ13066 116 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 ZNF750Q32MQ0 723 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 GAGE2EQ4V326 116 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 LILRA3Q8N6C8 439 aaPredicted RBP11.66□□□□□ -0.54
USP40-208ENST00000450966 CLDN23Q96B33 292 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 CHRNA10Q9GZZ6 450 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 GAGE2DQ9UEU5 116 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 SERTM1A2A2V5 107 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 CRYM-AS1A6NIL9 109 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 C21orf140B9A014 251 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 TMEM250H0YL14 139 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 NRG2O14511 850 aaPredicted RBP11.66□□□□□ -0.54
USP40-208ENST00000450966 ADRA2AP08913 450 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 RPL11P62913 178 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms