RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SYT6Q5T7P8 510 aaPredicted RBP16.43■□□□□ 0.22
SDC1-205ENST00000447124 AWAT2Q6E213 333 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 RAB12Q6IQ22 244 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 Q6ZPA2 131 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 MOB3BQ86TA1 216 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 GAPTQ8N292 157 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 C8orf31Q8N9H6 132 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 RBMXL1Q96E39 390 aaKnown RBP16.43■□□□□ 0.22
SDC1-205ENST00000447124 SELENOIQ9C0D9 397 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 SPACA1Q9HBV2 294 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 ETAA1Q9NY74 926 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 PEX16Q9Y5Y5 336 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 CCRL2O00421 344 aa16.42■□□□□ 0.22
SDC1-205ENST00000447124 IGLL1P15814 213 aa16.42■□□□□ 0.22
SDC1-205ENST00000447124 MGMTP16455 207 aa16.42■□□□□ 0.22
SDC1-205ENST00000447124 ZNF329Q86UD4 541 aa16.42■□□□□ 0.22
SDC1-205ENST00000447124 OR1L1Q8NH94 360 aa16.42■□□□□ 0.22
SDC1-205ENST00000447124 SGCDQ92629 289 aa16.42■□□□□ 0.22
SDC1-205ENST00000447124 EAF1Q96JC9 268 aaPredicted RBP16.42■□□□□ 0.22
SDC1-205ENST00000447124 NOL4LQ96MY1 436 aaPredicted RBP16.42■□□□□ 0.22
SDC1-205ENST00000447124 LINC00527Q9UJ94 153 aa16.42■□□□□ 0.22
SDC1-205ENST00000447124 FGF16O43320 207 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 CDK1P06493 297 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 RCC1P18754 421 aaPredicted RBP16.41■□□□□ 0.22
SDC1-205ENST00000447124 ACSM3Q53FZ2 586 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 CT45A1Q5HYN5 189 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 C6orf141Q5SZD1 244 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 FAM27D1Q5T7N8 215 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 RNLSQ5VYX0 342 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 Q8N6K4 173 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 ZNF439Q8NDP4 499 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 OR4X2Q8NGF9 303 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 CT45A3Q8NHU0 189 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 PHF21AQ96BD5 680 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 Q96M66 194 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 TRAPPC2LQ9UL33 140 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 ERGIC3Q9Y282 383 aa16.41■□□□□ 0.22
SDC1-205ENST00000447124 UBE2QL1A1L167 161 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 PSMB11A5LHX3 300 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 FAM90A10PA6NDY2 464 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 FAM90A7PA6NKC0 464 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 FAM90A23PA8MXZ1 464 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 ZNF736B4DX44 427 aaPredicted RBP16.4■□□□□ 0.22
SDC1-205ENST00000447124 PTGES3LE9PB15 166 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 CRTAPO75718 401 aaPredicted RBP16.4■□□□□ 0.22
SDC1-205ENST00000447124 SC5DO75845 299 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 HBZP02008 142 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 PF4V1P10720 104 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 FUT3P21217 361 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 FOXB2Q5VYV0 432 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 LRRTM1Q86UE6 522 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 UQCC2Q9BRT2 126 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 PLSCR3Q9NRY6 295 aa16.4■□□□□ 0.22
SDC1-205ENST00000447124 LSM2Q9Y333 95 aaKnown RBP16.4■□□□□ 0.22
SDC1-205ENST00000447124 IGHG2P01859 326 aa16.39■□□□□ 0.21
SDC1-205ENST00000447124 CD33P20138 364 aa16.39■□□□□ 0.21
SDC1-205ENST00000447124 Q3ZCU0 254 aa16.39■□□□□ 0.21
SDC1-205ENST00000447124 SLC25A48Q6ZT89 311 aaKnown RBP16.39■□□□□ 0.21
SDC1-205ENST00000447124 OR10V1Q8NGI7 309 aa16.39■□□□□ 0.21
SDC1-205ENST00000447124 NRG4Q8WWG1 115 aa16.39■□□□□ 0.21
SDC1-205ENST00000447124 RTN4IP1Q8WWV3 396 aaPredicted RBP16.39■□□□□ 0.21
SDC1-205ENST00000447124 FAM46BQ96A09 425 aa16.39■□□□□ 0.21
SDC1-205ENST00000447124 NECAP2Q9NVZ3 263 aa16.39■□□□□ 0.21
SDC1-205ENST00000447124 GLAP06280 429 aa16.38■□□□□ 0.21
SDC1-205ENST00000447124 GABPB1Q06547 395 aaPredicted RBP16.38■□□□□ 0.21
SDC1-205ENST00000447124 OR10K2Q6IF99 312 aa16.38■□□□□ 0.21
SDC1-205ENST00000447124 C18orf65Q6ZTR6 163 aa16.38■□□□□ 0.21
SDC1-205ENST00000447124 IZUMO1Q8IYV9 350 aa16.38■□□□□ 0.21
SDC1-205ENST00000447124 PRR18Q8N4B5 295 aa16.38■□□□□ 0.21
SDC1-205ENST00000447124 NKAIN3Q8N8D7 197 aa16.38■□□□□ 0.21
SDC1-205ENST00000447124 Q8N9W7 124 aa16.38■□□□□ 0.21
SDC1-205ENST00000447124 AURKAIP1Q9NWT8 199 aaPredicted RBP16.38■□□□□ 0.21
SDC1-205ENST00000447124 H0YHG0 523 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 SPINT2O43291 252 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 CA11O75493 328 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 CD37P11049 281 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 MAPK3P27361 379 aaPredicted RBP16.37■□□□□ 0.21
SDC1-205ENST00000447124 CD1BP29016 333 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 IRF3Q14653 427 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 KHDC1LQ5JSQ8 128 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 C1orf100Q5SVJ3 147 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 C6orf183Q5T699 404 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 REC114Q7Z4M0 266 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 MS4A15Q8N5U1 240 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 OR2T10Q8NGZ9 312 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 MRPL30Q8TCC3 161 aaKnown RBP16.37■□□□□ 0.21
SDC1-205ENST00000447124 DCLRE1BQ9H816 532 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 TAF9BQ9HBM6 251 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 MBNL3Q9NUK0 354 aaKnown RBP16.37■□□□□ 0.21
SDC1-205ENST00000447124 GNG12Q9UBI6 72 aa16.37■□□□□ 0.21
SDC1-205ENST00000447124 NCBP2LA6PVI3 153 aaKnown RBP16.36■□□□□ 0.21
SDC1-205ENST00000447124 SERPINE3A8MV23 424 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 PDCD6O75340 191 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 MPIG6BO95866 241 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 PF4P02776 101 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 VSIG8P0DPA2 414 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 IL3RAP26951 378 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 ZNF137PP52743 207 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 GPR50Q13585 617 aa16.36■□□□□ 0.21
SDC1-205ENST00000447124 SPHARQ15513 63 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms