RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 APC2O95996 2303 aa16.95■□□□□ 0.3
USP39-204ENST00000409766 CHD3Q12873 2000 aaKnown RBP16.94■□□□□ 0.3
USP39-204ENST00000409766 CLEC18AA5D8T8 446 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 M0R1B8 84 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 JTBO76095 146 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 HEXAP06865 529 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 HOXD4P09016 255 aaPredicted RBP16.94■□□□□ 0.3
USP39-204ENST00000409766 S100GP29377 79 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 P2RY1P47900 373 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 NMSQ5H8A3 153 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 GPR157Q5UAW9 335 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 CLEC18CQ8NCF0 446 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 PRR7Q8TB68 274 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 SPIN2AQ99865 258 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 SPIN2BQ9BPZ2 258 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 RCL1Q9Y2P8 373 aaKnown RBP16.94■□□□□ 0.3
USP39-204ENST00000409766 KIAA2026Q5HYC2 2103 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 WNT2P09544 360 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 VDAC1P21796 283 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 ALKBH2Q6NS38 261 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 MUCL1Q96DR8 90 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 PIGMQ9H3S5 423 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 ASF1BQ9NVP2 202 aa16.94■□□□□ 0.3
USP39-204ENST00000409766 TMEM30CPA0ZSE6 113 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 HSPA12AO43301 675 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 ADAM20O43506 726 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 GPR137BO60478 399 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 PTBP3O95758 552 aaKnown RBP16.93■□□□□ 0.3
USP39-204ENST00000409766 SLC35E4Q6ICL7 350 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 LRP11Q86VZ4 500 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 UBALD1Q8TB05 177 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 BSCL2Q96G97 398 aaPredicted RBP16.93■□□□□ 0.3
USP39-204ENST00000409766 SCNM1Q9BWG6 230 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 C11orf1Q9H5F2 150 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 TP53TG5Q9Y2B4 290 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 ACACAQ13085 2346 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 CADP27708 2225 aa16.93■□□□□ 0.3
USP39-204ENST00000409766 MZT1Q08AG7 82 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 EIF5AL1Q6IS14 154 aaKnown RBP16.92■□□□□ 0.3
USP39-204ENST00000409766 STPG2Q8N412 459 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 OR2Z1Q8NG97 314 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 MARC2Q969Z3 335 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 SMIM3Q9BZL3 60 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 LPAR3Q9UBY5 353 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 DUSP13Q9UII6 198 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 RP1L1Q8IWN7 2480 aaPredicted RBP16.92■□□□□ 0.3
USP39-204ENST00000409766 IGHV3-13P01766 116 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 CRYAAP02489 173 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 NKX2-1P43699 371 aaPredicted RBP16.92■□□□□ 0.3
USP39-204ENST00000409766 TDGF1P3P51864 188 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 GNMTQ14749 295 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 SMIM21Q3B7S5 101 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 CLEC9AQ6UXN8 241 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 SPACA3Q8IXA5 215 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 UBAC2Q8NBM4 344 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 AKR1E2Q96JD6 320 aa16.92■□□□□ 0.3
USP39-204ENST00000409766 PARP12Q9H0J9 701 aaKnown RBP16.92■□□□□ 0.3
USP39-204ENST00000409766 A8MXE2 369 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 IFNL4K9M1U5 179 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 GLRXP35754 106 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 CEACAM6P40199 344 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 NKX6-1P78426 367 aaPredicted RBP16.91■□□□□ 0.3
USP39-204ENST00000409766 OR51H1Q8NH63 302 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 COQ2Q96H96 371 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 ABHD14BQ96IU4 210 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 SPEF1Q9Y4P9 236 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 RAB19A4D1S5 217 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 TFF1P04155 84 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 CD200P41217 278 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 AESQ08117 197 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 BOLLQ8N9W6 283 aaKnown RBP16.91■□□□□ 0.3
USP39-204ENST00000409766 KCNIP1Q9NZI2 227 aa16.91■□□□□ 0.3
USP39-204ENST00000409766 ZNF705EA8MWA4 302 aaPredicted RBP16.9■□□□□ 0.3
USP39-204ENST00000409766 C12orf77C9JDV5 145 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 OR3A1P47881 315 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 FAM27E3Q08E93 113 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 CXorf66Q5JRM2 361 aaPredicted RBP16.9■□□□□ 0.3
USP39-204ENST00000409766 Q8NA96 180 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 LRRC29Q8WV35 223 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 SAT2Q96F10 170 aaPredicted RBP16.9■□□□□ 0.3
USP39-204ENST00000409766 SMIM8Q96KF7 97 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 ARV1Q9H2C2 271 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 METRNQ9UJH8 293 aa16.9■□□□□ 0.3
USP39-204ENST00000409766 MAP1BP46821 2468 aaKnown RBP16.9■□□□□ 0.3
USP39-204ENST00000409766 OOEPA6NGQ2 149 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 ZSCAN5BA6NJL1 495 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 PSG2P11465 335 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 BMP5P22003 454 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 POLR2GP62487 172 aaKnown RBP eCLIP16.89■□□□□ 0.29
USP39-204ENST00000409766 COL10A1Q03692 680 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 MST1LQ2TV78 715 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 UQCC3Q6UW78 93 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 DOLPP1Q86YN1 238 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 WFDC1Q9HC57 220 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 PIGBOS1A0A0B4J2F0 54 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 SERPINE2P07093 398 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 OR8U9P0C7N5 309 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 M6PRP20645 277 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 SULT1A2P50226 295 aa16.89■□□□□ 0.29
USP39-204ENST00000409766 KLF3P57682 345 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms