RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MRPS11P82912 194 aaKnown RBP11.25□□□□□ -0.61
LIMS1-204ENST00000409441 HAGHLQ6PII5 290 aaPredicted RBP11.25□□□□□ -0.61
LIMS1-204ENST00000409441 ZNF826PQ6ZT77 177 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 TGIF2LYQ8IUE0 185 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 SGPP2Q8IWX5 399 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 ANGPTL6Q8NI99 470 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 RDH5Q92781 318 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 TLNRD1Q9H1K6 362 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 RHOFQ9HBH0 211 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 C1orf123Q9NWV4 160 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 RDH8Q9NYR8 311 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 NAV2Q8IVL1 2488 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 C13orf42A0A1B0GVH6 325 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 CRYM-AS1A6NIL9 109 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 TRAPPC2LH3BP13 241 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 IFNA2P01563 188 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 PI3P19957 117 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 NPBWR2P48146 333 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 UCP3P55916 312 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 HFEQ30201 348 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 ANKRD55Q3KP44 614 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 COMMD7Q86VX2 200 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 INO80EQ8NBZ0 244 aaPredicted RBP11.24□□□□□ -0.61
LIMS1-204ENST00000409441 SLAMF9Q96A28 289 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 C2orf50Q96LR7 162 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 PKIBQ9C010 78 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 BARX1Q9HBU1 254 aaPredicted RBP11.24□□□□□ -0.61
LIMS1-204ENST00000409441 ZNF581Q9P0T4 197 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 RCC2Q9P258 522 aaKnown RBP11.24□□□□□ -0.61
LIMS1-204ENST00000409441 RNF222A6NCQ9 220 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 RHBDL1O75783 438 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 OR7C1O76099 320 aaPredicted RBP11.24□□□□□ -0.61
LIMS1-204ENST00000409441 GLAP06280 429 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 ZNF728P0DKX0 622 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 LYL1P12980 280 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 GLP1RP43220 463 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 IL24Q13007 206 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 IL13RA2Q14627 380 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 LRRC37A5PQ49AS3 106 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 WDR82Q6UXN9 313 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 OR11L1Q8NGX0 322 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 Q8TCH9 128 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 SPACA1Q9HBV2 294 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 TMEM106BQ9NUM4 274 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 MBD2Q9UBB5 411 aa11.24□□□□□ -0.61
LIMS1-204ENST00000409441 hCG_1807616A0A1W2PRN6 198 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 LRRC30A6NM36 301 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 J3QT63 122 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 SYNGR1O43759 233 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 PET100P0DJ07 73 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 THOC7Q6I9Y2 204 aaKnown RBP11.23□□□□□ -0.61
LIMS1-204ENST00000409441 LRRC75A-AS1Q8N1F1 130 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 ST8SIA2Q92186 375 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 MOB3AQ96BX8 217 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 PHYHIPLQ96FC7 376 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 RIMS4Q9H426 269 aaPredicted RBP11.23□□□□□ -0.61
LIMS1-204ENST00000409441 METTL8Q9H825 291 aaKnown RBP11.23□□□□□ -0.61
LIMS1-204ENST00000409441 DCAF16Q9NXF7 216 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 RNF7Q9UBF6 113 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 KCNIP3Q9Y2W7 256 aa11.23□□□□□ -0.61
LIMS1-204ENST00000409441 A0A1B0GW55 424 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 IFNL4K9M1U5 179 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 CYB5R3P00387 301 aaPredicted RBP11.22□□□□□ -0.61
LIMS1-204ENST00000409441 KNG1P01042 644 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DUX4L2P0CJ85 424 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DUX4L3P0CJ86 424 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DUX4L4P0CJ87 422 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DUX4L5P0CJ88 424 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DUX4L6P0CJ89 424 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DUX4L7P0CJ90 424 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 IRF2P14316 349 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 CFHR2P36980 270 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 TMEM33P57088 247 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 PRSS54Q6PEW0 395 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 SLC38A6Q8IZM9 456 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 ZNF525Q8N782 197 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 POC1AQ8NBT0 407 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 LRRC29Q8WV35 223 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DYRK2Q92630 601 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 GALNT14Q96FL9 552 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 SLC25A32Q9H2D1 315 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 CHODLQ9H9P2 273 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 MTCH1Q9NZJ7 389 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 DUX4Q9UBX2 424 aa11.22□□□□□ -0.61
LIMS1-204ENST00000409441 ARID1AO14497 2285 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 TEX13DA0A0J9YY54 714 aaPredicted RBP11.21□□□□□ -0.61
LIMS1-204ENST00000409441 TMEM178BH3BS89 294 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 ADAP1O75689 374 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 NAPSAO96009 420 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 LHBP01229 141 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 NMBP08949 121 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 P2RX3P56373 397 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 HERV-K104P61576 105 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 ALKAL2Q6UX46 152 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 BOLLQ8N9W6 283 aaKnown RBP11.21□□□□□ -0.61
LIMS1-204ENST00000409441 CCDC71LQ8N9Z2 235 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 OR10Z1Q8NGY1 313 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 DCUN1D4Q92564 292 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 ARPC5LQ9BPX5 153 aa11.21□□□□□ -0.61
LIMS1-204ENST00000409441 SUCNR1Q9BXA5 334 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms