RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 RPS23P62266 143 aaKnown RBP15.96■□□□□ 0.15
USP48-204ENST00000400301 SIGLEC12Q96PQ1 595 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 KCNIP2Q9NS61 270 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 RYDENQ9NUL5 291 aaKnown RBP15.96■□□□□ 0.15
USP48-204ENST00000400301 IGHV3-13P01766 116 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 IGHV3-7P01780 117 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 FHITP49789 147 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 CASP6P55212 293 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 ZIC4Q8N9L1 334 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 CACNA1HO95180 2353 aa15.96■□□□□ 0.15
USP48-204ENST00000400301 A0A1B0GU03 582 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 LOC105371267A0A1B0GV96 52 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 FCGR3BO75015 233 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 NAT1P18440 290 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 HTD2P86397 168 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 BTNL3Q6UXE8 466 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 TP53RKQ96S44 253 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 DUXBA0A1W2PPF3 345 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 C22orf15Q8WYQ4 148 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 Q9N2K0 584 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 CD200P41217 278 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 NOVA1P51513 510 aaKnown RBP15.95■□□□□ 0.14
USP48-204ENST00000400301 LINC00596Q86U02 117 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 RSRP1Q9BUV0 290 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 MRPL41Q8IXM3 137 aaKnown RBP15.95■□□□□ 0.14
USP48-204ENST00000400301 CXXC4Q9H2H0 198 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 SLC25A22Q9H936 323 aa15.95■□□□□ 0.14
USP48-204ENST00000400301 ROS1P08922 2347 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 PITX3O75364 302 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 UCP3P55916 312 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 QRFPP83859 136 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 OR1K1Q8NGR3 316 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 SH3BGRL3Q9H299 93 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 PNRC2Q9NPJ4 139 aaKnown RBP15.94■□□□□ 0.14
USP48-204ENST00000400301 CACFD1Q9UGQ2 172 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 SLC25A6P12236 298 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 MSL2Q9HCI7 577 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 FOXJ2Q9P0K8 574 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 C2orf16Q68DN1 1984 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 CTRB1P17538 263 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 UBE2G2P60604 165 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 TGIF1Q15583 401 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 ZNF528Q3MIS6 628 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 RNF212Q495C1 297 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 FFAR4Q5NUL3 377 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 CTRB2Q6GPI1 263 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 DHRS11Q6UWP2 260 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 GALNT14Q96FL9 552 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 ZNF552Q9H707 407 aaPredicted RBP15.94■□□□□ 0.14
USP48-204ENST00000400301 GLRX2Q9NS18 164 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 DLL3Q9NYJ7 618 aa15.94■□□□□ 0.14
USP48-204ENST00000400301 TSTD3H0UI37 97 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 RNF122Q9H9V4 155 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 ZNF705FA8MVS1 300 aaPredicted RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 ZNF705DP0CH99 300 aaPredicted RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 ZNF705BP0CI00 300 aaPredicted RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 CFPP27918 469 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 ZNF818PQ6ZRF7 136 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 NABP1Q96AH0 204 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 A0A1W2PPQ1 181 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 NKX6-3A6NJ46 265 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 LRRC30A6NM36 301 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 H0Y980 276 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 ZFP36L1Q07352 338 aaKnown RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 TMEM41BQ5BJD5 291 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 OR13D1Q8NGV5 346 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 ABHD5Q8WTS1 349 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 GMPPAQ96IJ6 420 aaPredicted RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 PGLYRP1O75594 196 aaPredicted RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 H3F3AP84243 136 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 PLGLAQ15195 96 aa15.93■□□□□ 0.14
USP48-204ENST00000400301 TIPARPQ7Z3E1 657 aaKnown RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 SELENOHQ8IZQ5 122 aaKnown RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 ZNF703Q9H7S9 590 aaPredicted RBP15.93■□□□□ 0.14
USP48-204ENST00000400301 CLDN34H7C241 214 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 COX5BP10606 129 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 RAB5AP20339 215 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 PPP1CCP36873 323 aaKnown RBP15.92■□□□□ 0.14
USP48-204ENST00000400301 AESQ08117 197 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 REG4Q9BYZ8 158 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 DEPPQ9NTK1 212 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 DECR2Q9NUI1 292 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 ZNF716A6NP11 495 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 H3BQ15 152 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 IZUMO4Q1ZYL8 232 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 CPEB3Q8NE35 698 aaKnown RBP15.92■□□□□ 0.14
USP48-204ENST00000400301 FOXD3Q9UJU5 478 aaPredicted RBP15.92■□□□□ 0.14
USP48-204ENST00000400301 ALPK3Q96L96 1907 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 SUPT4H1P63272 117 aaKnown RBP15.92■□□□□ 0.14
USP48-204ENST00000400301 IGFBP7Q16270 282 aa15.92■□□□□ 0.14
USP48-204ENST00000400301 C3orf80F5H4A9 247 aa15.91■□□□□ 0.14
USP48-204ENST00000400301 ENSAO43768 121 aaKnown RBP15.91■□□□□ 0.14
USP48-204ENST00000400301 RD3LP0DJH9 198 aa15.91■□□□□ 0.14
USP48-204ENST00000400301 MEOX2P50222 304 aa15.91■□□□□ 0.14
USP48-204ENST00000400301 ATP1A1-AS1Q5TC04 95 aa15.91■□□□□ 0.14
USP48-204ENST00000400301 ZNF385CQ66K41 422 aaPredicted RBP15.91■□□□□ 0.14
USP48-204ENST00000400301 SAXO1Q8IYX7 474 aa15.91■□□□□ 0.14
USP48-204ENST00000400301 ZNF737O75373 536 aa15.91■□□□□ 0.14
USP48-204ENST00000400301 OR2H2O95918 312 aa15.91■□□□□ 0.14
USP48-204ENST00000400301 INO80CQ6PI98 192 aaPredicted RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms