RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 GFI1BQ5VTD9 330 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 FAM90A2PQ658T7 463 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 MRPL21Q7Z2W9 205 aaKnown RBP10.83□□□□□ -0.68
SHMT1-205ENST00000395684 STX12Q86Y82 276 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 MKXQ8IYA7 352 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 RDH5Q92781 318 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 TMEM45BQ96B21 275 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 SIRT7Q9NRC8 400 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 RPRMQ9NS64 109 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 ERRFI1Q9UJM3 462 aaPredicted RBP10.83□□□□□ -0.68
SHMT1-205ENST00000395684 TRAV1-1A0A0B4J248 108 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 CFIP05156 583 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 SRYQ05066 204 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 OR2B11Q5JQS5 317 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 LINC00469Q8N7U9 141 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 GAR1Q9NY12 217 aaKnown RBP10.82□□□□□ -0.68
SHMT1-205ENST00000395684 OR2W1Q9Y3N9 320 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 DMRT1Q9Y5R6 373 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 TRAV24A0A0B4J272 114 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 A0A1B0GU03 582 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 LILRA1O75019 489 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 DFFBO76075 338 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 IGKV1-39P01597 117 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 IGKV1D-39P04432 117 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 JMJD7P0C870 316 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 CD200P41217 278 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 RAB11AP62491 216 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 ARL16Q0P5N6 197 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 PMS2CLQ68D20 193 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF665Q9H7R5 613 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 SIT1Q9Y3P8 196 aa10.82□□□□□ -0.68
SHMT1-205ENST00000395684 ARGFXA6NJG6 315 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 ZFP92A6NM28 416 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 IFNA5P01569 189 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 SERPINE2P07093 398 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF726P1Q15940 193 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 SPINK14Q6IE38 97 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 SLC25A24Q6NUK1 477 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 SSX7Q7RTT5 188 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 TUSC5Q8IXB3 177 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 H1FOOQ8IZA3 346 aaPredicted RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 C17orf78Q8N4C9 275 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 OR10G4Q8NGN3 311 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 OR10J5Q8NHC4 309 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 PRO3102Q9H379 93 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 PATE3B3GLJ2 98 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 IGLV2-14P01704 120 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 SOD3P08294 240 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 S100A2P29034 98 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 IGFBP7Q16270 282 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 LCN15Q6UWW0 184 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 OR5A2Q8NGI9 324 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 ABHD5Q8WTS1 349 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 PSMF1Q92530 271 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 APOBEC3DQ96AK3 386 aaPredicted RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 RAB40CQ96S21 281 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 OR1A1Q9P1Q5 309 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 MRPS18CQ9Y3D5 142 aaKnown RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 IGKV3D-15A0A087WSY6 115 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 SS18L1O75177 396 aaPredicted RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 CELA3AP09093 270 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 CYB561P49447 251 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 FGF8P55075 233 aaPredicted RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 TRA2AQ13595 282 aaKnown RBP eCLIP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 PDZD11Q5EBL8 140 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 C9orf152Q5JTZ5 239 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 IL1F10Q8WWZ1 152 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 GTF3AQ92664 365 aaKnown RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 GPR61Q9BZJ8 451 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 RIMS4Q9H426 269 aaPredicted RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 CISD1Q9NZ45 108 aaKnown RBP10.81□□□□□ -0.68
SHMT1-205ENST00000395684 CACNG5Q9UF02 275 aa10.81□□□□□ -0.68
SHMT1-205ENST00000395684 FRYQ5TBA9 3013 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 TRAV39A0A0B4J263 110 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 CD300LBA8K4G0 201 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 CNOT4O95628 575 aaKnown RBP10.8□□□□□ -0.68
SHMT1-205ENST00000395684 METTL15P1P0C7V9 234 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 IAPPP10997 89 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 SLC25A6P12236 298 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF880Q6PDB4 577 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 HAPLN4Q86UW8 402 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 OR10D4PQ8NGN7 298 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 OR5P3Q8WZ94 311 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 LINC00470Q9BZP3 86 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 TRBV6-6A0A0A6YYG2 114 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF729A6NN14 1252 aaPredicted RBP10.8□□□□□ -0.68
SHMT1-205ENST00000395684 BCL2P10415 239 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF787Q6DD87 383 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF383Q8NA42 475 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 FRZBQ92765 325 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 FAM210BQ96KR6 192 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 POM121L2Q96KW2 1035 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 HIST1H2AAQ96QV6 131 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 DLL3Q9NYJ7 618 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 OR14J1Q9UGF5 321 aa10.8□□□□□ -0.68
SHMT1-205ENST00000395684 B4DEV8 164 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 SEC14L6B5MCN3 397 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 SYNGR2O43760 224 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 RHBDL1O75783 438 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 IGKV1-5P01602 117 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms