RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 OR8G5Q8NG78 346 aa11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 PRR7Q8TB68 274 aa11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 RNASE6Q93091 150 aaKnown RBP11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 MRPL24Q96A35 216 aaKnown RBP11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 IFT22Q9H7X7 185 aa11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 IL36GQ9NZH8 169 aa11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 FAM96BQ9Y3D0 163 aa11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 ICE1Q9Y2F5 2266 aa11.16□□□□□ -0.62
SQSTM1-201ENST00000360718 PCP4L1A6NKN8 68 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 SCGB1D2O95969 90 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 PRB1P04280 392 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 RCC1P18754 421 aaPredicted RBP11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 CHATP28329 748 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 SELENOVP59797 346 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 TLE1Q04724 770 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 PEA15Q15121 130 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 OR8G1Q15617 311 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 Q6ZRG5 221 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 CALHM1Q8IU99 346 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 SAXO1Q8IYX7 474 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 OSR2Q8N2R0 312 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 RTN4IP1Q8WWV3 396 aaPredicted RBP11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 TOMM40LQ969M1 308 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 ZNF286AQ9HBT8 521 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 KCNJ16Q9NPI9 418 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 FZR1Q9UM11 496 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 KPTNQ9Y664 436 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 HCFC1P51610 2035 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 SPTBN1Q01082 2364 aaKnown RBP11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 SEC11BP0C7V7 166 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 TMEM187Q14656 261 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 AVPI1Q5T686 147 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 LGI3Q8N145 548 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 CCDC71LQ8N9Z2 235 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 POM121Q96HA1 1249 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 KIRREL1Q96J84 757 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 WFIKKN1Q96NZ8 548 aa11.15□□□□□ -0.62
SQSTM1-201ENST00000360718 ROS1P08922 2347 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 CHD3Q12873 2000 aaKnown RBP11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 TRAPPC2LH3BP13 241 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 GPR137BO60478 399 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 TSPAN15O95858 294 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 F12P00748 615 aaPredicted RBP11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 CD80P33681 288 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 GLP1RP43220 463 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 UCP3P55916 312 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 KLF3P57682 345 aaPredicted RBP11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 LIAT1Q6ZQX7 453 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 LILRB1Q8NHL6 650 aaPredicted RBP11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 SMCO4Q9NRQ5 59 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 DUSP13Q9UII6 198 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 H7C1Q1 480 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 OR5AC1P0C628 307 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 DUSP1P28562 367 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 PMELP40967 661 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 NKX6-1P78426 367 aaPredicted RBP11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 MZT1Q08AG7 82 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 IL13RA2Q14627 380 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 VHLLQ6RSH7 139 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 FAM219AQ8IW50 185 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 LYPD6BQ8NI32 183 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 PKIBQ9C010 78 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 ARV1Q9H2C2 271 aa11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 ESRP2Q9H6T0 727 aaKnown RBP11.14□□□□□ -0.63
SQSTM1-201ENST00000360718 LRP5LA4QPB2 252 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 TMEM210A6NLX4 147 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 AGPAT2O15120 278 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 MBPP02686 304 aaPredicted RBP11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 P2RY1P47900 373 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 RAB5CP51148 216 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 SLC22A25Q6T423 547 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 GLYATL2Q8WU03 294 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 SLAMF9Q96A28 289 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 SMIM3Q9BZL3 60 aa11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 ANKHD1Q8IWZ3 2542 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-201ENST00000360718 IGKV1-12A0A0C4DH73 117 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 DPRXA6NFQ7 191 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 ST8SIA3O43173 380 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 IGKV1D-12P01611 117 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 IGHV3-13P01766 116 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 AKR1D1P51857 326 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 FXYD4P59646 89 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 HERV-K104P61576 105 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 BSPH1Q075Z2 132 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 SP6Q3SY56 376 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 NUP37Q8NFH4 326 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 OR10AD1Q8NGE0 317 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 TMEM171Q8WVE6 324 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 C18orf12Q96KH6 178 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 OR51I2Q9H344 312 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 ST3GAL6Q9Y274 331 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 POLDIP2Q9Y2S7 368 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 VSTM5A8MXK1 200 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 J3QT63 122 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 GEMIN2O14893 280 aaKnown RBP11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 PDCD6O75340 191 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 SRPXP78539 464 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 IL24Q13007 206 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 C4orf17Q53FE4 359 aa11.12□□□□□ -0.63
SQSTM1-201ENST00000360718 LRP11Q86VZ4 500 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms