RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 DUX4L7P0CJ90 424 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 PRKAR1AP10644 381 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 CA6P23280 308 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 GLRA1P23415 457 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUSP1P28562 367 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 CD34P28906 385 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 SSTR2P30874 369 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 CYB561P49447 251 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 CARD18P57730 90 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 FGF12P61328 243 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 SEC61A1P61619 476 aaKnown RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 ARF1P84077 181 aaKnown RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 PSG7Q13046 419 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 GRK1Q15835 563 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 AANATQ16613 207 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 IGSF11Q5DX21 431 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUX4L9Q6RFH8 374 aaPredicted RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 BTNL8Q6UX41 500 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 ZNF66Q6ZN08 573 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 ZNF818PQ6ZRF7 136 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 TRAPPC6BQ86SZ2 158 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 TMEM156Q8N614 296 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 RELL2Q8NC24 303 aaPredicted RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 TMEM116Q8NCL8 245 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 CCDC54Q8NEL0 328 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 OR52L2PQ8NGH6 319 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 OR51F2Q8NH61 342 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 ELMOD3Q96FG2 381 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 S100A16Q96FQ6 103 aaKnown RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 HYLS1Q96M11 299 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 LINC00052Q96N35 136 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 FAAP24Q9BTP7 215 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 ACTR6Q9GZN1 396 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 NARFLQ9H6Q4 476 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 METTL8Q9H825 291 aaKnown RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 GHRLQ9UBU3 117 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUX4Q9UBX2 424 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 KIF25Q9UIL4 384 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 MRPS28Q9Y2Q9 187 aaKnown RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 DNAH8Q96JB1 4490 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 STARD9Q9P2P6 4700 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 IGKV1D-17A0A075B6S4 117 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 TUBAL3A6NHL2 446 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SLC22A20A6NK97 555 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SIGLEC5O15389 551 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SGCEO43556 437 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SYT7O43581 403 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ANGPTL7O43827 346 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ADAP1O75689 374 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 IGKV1-5P01602 117 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 PMP2P02689 132 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CD5P06127 495 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ERCC1P07992 297 aaPredicted RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 H2BFMP0C1H6 154 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ICAM2P13598 275 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SELEP16581 610 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 TBPP20226 339 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 RAB3AP20336 220 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 STOMP27105 288 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 MAS1LP35410 378 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 INPP1P49441 399 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 AP2S1P53680 142 aaPredicted RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 TAS2R19P59542 299 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CSNK2A1P68400 391 aaPredicted RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 VWC2Q2TAL6 325 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 BSXQ3C1V8 233 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 LPCAT3Q6P1A2 487 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SPSB3Q6PJ21 355 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 IDO2Q6ZQW0 420 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 Q6ZT83 130 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 TMUB2Q71RG4 321 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 VASH2Q86V25 355 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 MDP1Q86V88 176 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 LRP11Q86VZ4 500 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZNF573Q86YE8 665 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 H1FOOQ8IZA3 346 aaPredicted RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 CD177Q8N6Q3 437 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZNF676Q8N7Q3 588 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 OR52M1Q8NGK5 317 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 OR11L1Q8NGX0 322 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 OR10K1Q8NGX5 313 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 TERB2Q8NHR7 220 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 MARCH1Q8TCQ1 289 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 MAFIPQ8WZ33 124 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ERGIC1Q969X5 290 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SPSB1Q96BD6 273 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 PIK3IP1Q96FE7 263 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 DHRS9Q9BPW9 319 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 EGLN1Q9GZT9 426 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 TMEM9BQ9NQ34 198 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SDHAF3Q9NRP4 125 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 GLRX2Q9NS18 164 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 GPR173Q9NS66 373 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 HPF1Q9NWY4 346 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 STMN3Q9NZ72 180 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CADP27708 2225 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 PTPRQQ9UMZ3 2332 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 DIDO1Q9BTC0 2240 aaKnown RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 FAM240BA0A1B0GVZ2 78 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms