RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SIRT7Q9NRC8 400 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 ZNF672Q499Z4 452 aaPredicted RBP8.67□□□□□ -1.02
USP54-201ENST00000339859 ZNF788Q6ZQV5 615 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 GVQW1Q8N7I0 195 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 DUSP18Q8NEJ0 188 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 DYRK2Q92630 601 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 FLVCR2Q9UPI3 526 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 REG1BP48304 166 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 HTD2P86397 168 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 GAPTQ8N292 157 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 C20orf24Q9BUV8 137 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 MAGT1Q9H0U3 335 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 C7orf69Q9H7B7 122 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 OR2F2O95006 317 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 COX5AP20674 150 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 SLC35E4Q6ICL7 350 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 TMEM91Q6ZNR0 172 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 PNKDQ8N490 385 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 RBPMSQ93062 196 aaKnown RBP8.67□□□□□ -1.02
USP54-201ENST00000339859 GINS3Q9BRX5 216 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 REPIN1Q9BWE0 567 aaKnown RBP8.67□□□□□ -1.02
USP54-201ENST00000339859 CRIM1Q9NZV1 1036 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 A0A0A6YYJ9 748 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 A0A1W2PPE3 182 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 I3L521 148 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 OR10J4P0C629 311 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 SLC25A6P12236 298 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 UBE2G1P62253 170 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 NCMAPQ5T1S8 102 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 TPRX1Q8N7U7 411 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 ZIC4Q8N9L1 334 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 ZNF837Q96EG3 531 aaPredicted RBP8.67□□□□□ -1.02
USP54-201ENST00000339859 CACNG5Q9UF02 275 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 LSM2Q9Y333 95 aaKnown RBP8.67□□□□□ -1.02
USP54-201ENST00000339859 JTBO76095 146 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 HPRT1P00492 218 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 OR5AC1P0C628 307 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 RPL12P30050 165 aaKnown RBP8.66□□□□□ -1.02
USP54-201ENST00000339859 MEF2CQ06413 473 aaPredicted RBP8.66□□□□□ -1.02
USP54-201ENST00000339859 FAM169BQ8N8A8 192 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 MARVELD3Q96A59 401 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 MALSU1Q96EH3 234 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 PARP11Q9NR21 331 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 METRNQ9UJH8 293 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 EFNA2O43921 213 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 OR2F1Q13607 317 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 C1orf100Q5SVJ3 147 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 HSD17B11Q8NBQ5 300 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 OR1L8Q8NGR8 309 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 RANGRFQ9HD47 186 aaPredicted RBP8.66□□□□□ -1.02
USP54-201ENST00000339859 SCN2AQ99250 2005 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 CEACAM4O75871 244 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 CRYGSP22914 178 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 RAB4BP61018 213 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 CLEC12BQ2HXU8 276 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 CELF2-AS1Q8N7Q2 184 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 OR4F17Q8NGA8 305 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 OR4F5Q8NH21 305 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 OR4F4Q96R69 305 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 DCTN5Q9BTE1 182 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 AKIP1Q9NQ31 210 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 CCL28Q9NRJ3 127 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 MTCH1Q9NZJ7 389 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 METTL1Q9UBP6 276 aaKnown RBP8.66□□□□□ -1.02
USP54-201ENST00000339859 HSF4Q9ULV5 492 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 MYLKQ15746 1914 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 MED19A0JLT2 244 aaPredicted RBP8.66□□□□□ -1.02
USP54-201ENST00000339859 SLC25A16P16260 332 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 SP6Q3SY56 376 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 FAM219AQ8IW50 185 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 OR10A7Q8NGE5 316 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 TRAV39A0A0B4J263 110 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 PYCARD-AS1I3L0S3 204 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 DVL1O14640 695 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 UBE2V2Q15819 145 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 ITPKCQ96DU7 683 aa8.66□□□□□ -1.02
USP54-201ENST00000339859 ADAM11O75078 769 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 USF1P22415 310 aaPredicted RBP8.65□□□□□ -1.02
USP54-201ENST00000339859 LY6EQ16553 131 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 OR1L4Q8NGR5 311 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 RNF141Q8WVD5 230 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 AAMDCQ9H7C9 122 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 SIRT4Q9Y6E7 314 aaPredicted RBP8.65□□□□□ -1.02
USP54-201ENST00000339859 GNG7O60262 68 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 LMX1BO60663 402 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 FBP1P09467 338 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 TRAPPC2P0DI81 140 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 TRAPPC2BP0DI82 140 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 PTHLHP12272 177 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 GLDNQ6ZMI3 551 aaPredicted RBP8.65□□□□□ -1.02
USP54-201ENST00000339859 TCTEX1D1Q8N7M0 179 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 FBLIM1Q8WUP2 373 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 C9orf170A2RU37 121 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 LALBAP00709 142 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 CT45A10P0DMU9 189 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 OPCMLQ14982 345 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 BVESQ8NE79 360 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 BPIFCQ8NFQ6 507 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 OR2T10Q8NGZ9 312 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 PGLYRP3Q96LB9 341 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms