RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ZNF295-AS1Q8N0V1 137 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 OR10J5Q8NHC4 309 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 ZFAND1Q8TCF1 268 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 MRGPRDQ8TDS7 321 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 GALMQ96C23 342 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 RTBDNQ9BSG5 229 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 RSRP1Q9BUV0 290 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 TAS2R3Q9NYW6 316 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 UBE2J1Q9Y385 318 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 OR2W1Q9Y3N9 320 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 LINC00312Q9Y6C7 94 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 TRGV10A0A0A0MS01 117 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 TRBV23-1A0A0A0MS06 115 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 TRAV39A0A0B4J263 110 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 hADV38S2A0JD32 116 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 LYNX1G3V0Z9 82 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 BET1O15155 118 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 SPINT2O43291 252 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 NDUFB3O43676 98 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 CREBL2O60519 120 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 WNT2P09544 360 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 OR4E1P0C645 316 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF728P0DKX0 622 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 LYNX1P0DP58 116 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 NFYAP23511 347 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 ZBTB25P24278 435 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 RND3P61587 244 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 RRAS2P62070 204 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 TMEM128Q5BJH2 165 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 LY6G6FQ5SQ64 297 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 CD276Q5ZPR3 534 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 LPCAT3Q6P1A2 487 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 LYPD2Q6UXB3 125 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 SPICQ8N5J4 248 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 TPRX1Q8N7U7 411 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 OR10A7Q8NGE5 316 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 OR1L1Q8NH94 360 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF431Q8TF32 576 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 TMEM230Q96A57 120 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 CALYQ9NYX4 217 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 JPT1Q9UK76 154 aa12.36□□□□□ -0.43
CCDC88C-202ENST00000334448 DSCAMO60469 2012 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 KBTBD11-OT1A0A1B0GTJ5 212 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF729A6NN14 1252 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 F5H0A9 414 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 ITGB1BP1O14713 200 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 PFDN1O60925 122 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 RPS2P15880 293 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 SSTR5P35346 364 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 EDDM3BP56851 147 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 C17orf58Q2M2W7 97 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF841Q6ZN19 808 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 C5orf24Q7Z6I8 188 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 TMED4Q7Z7H5 227 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 LYG2Q86SG7 212 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 FAM185AQ8N0U4 392 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 ARL11Q969Q4 196 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 CCL19Q99731 98 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 ING3Q9NXR8 418 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 OR1A1Q9P1Q5 309 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 CLN8Q9UBY8 286 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF69Q9UC07 566 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 MIOXQ9UGB7 285 aa12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 C14orf166Q9Y224 244 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-202ENST00000334448 DCHS2Q6V1P9 2916 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 A0A0B4J2A0 478 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 A1L4Q6 167 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 FAM172BPA6NC97 362 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 DVL1O14640 695 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 LY6HO94772 140 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 SULT1A3P0DMM9 295 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 SULT1A4P0DMN0 295 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 PGAM2P15259 253 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 IL2RGP31785 369 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 DHRS2Q13268 280 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 LDLRAD3Q86YD5 345 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 OR52M1Q8NGK5 317 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 C8orf46Q8TAG6 207 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 MITD1Q8WV92 249 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 CAPSLQ8WWF8 208 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 NEIL1Q96FI4 390 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 SEC22CQ9BRL7 303 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 DCTN5Q9BTE1 182 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 TMPRSS13Q9BYE2 586 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 BARX1Q9HBU1 254 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 RDH8Q9NYR8 311 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 SHPKQ9UHJ6 478 aa12.34□□□□□ -0.43
CCDC88C-202ENST00000334448 HELZ2Q9BYK8 2649 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 IGKV1D-13A0A0B4J2D9 117 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 C9orf170A2RU37 121 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 CRYM-AS1A6NIL9 109 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 PPIHO43447 177 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 DUS4LO95620 317 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 IGHV4-39P01824 125 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 IGKV1-13P0DP09 117 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 NDUFB7P17568 137 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 GNRHRP30968 328 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 LOXL3P58215 753 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 RPL31P62899 125 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 SUPT4H1P63272 117 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms