RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GBGT1Q8N5D6 347 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF441Q8N8Z8 693 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 OR1K1Q8NGR3 316 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 ST8SIA1Q92185 356 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 CTDSP1Q9GZU7 261 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 KLRF1Q9NZS2 232 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 M0R135 149 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 TP53I11O14683 189 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 CRYABP02511 175 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 CAPZBP47756 277 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 C17orf67Q0P5P2 114 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 OR2V1Q8NHB1 315 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF799Q96GE5 643 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 OR5B12Q96R08 314 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 GABRG3Q99928 467 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 RBM24Q9BX46 236 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 PLEK2Q9NYT0 353 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 NAT8Q9UHE5 227 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 CD207Q9UJ71 328 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 TRAV1-1A0A0B4J248 108 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 NPIPB13A6NJU9 1138 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 NPIPB4C9JG80 1138 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 LILRA1O75019 489 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 EGR1P18146 543 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 GCH1P30793 250 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 UCP3P55916 312 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 Q6ZRM9 215 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 TMEM56Q96MV1 263 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 TMEM56-RWDD3S4R434 201 aa11.54□□□□□ -0.56
CCDC88C-201ENST00000331194 MAP1LC3B2A6NCE7 125 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 IGKV1D-33P01593 117 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 IGKV1-33P01594 117 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 NPBWR2P48146 333 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 ENDOGQ14249 297 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 SCGB1C1Q8TD33 95 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 LRRC61Q9BV99 259 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 MAP1LC3BQ9GZQ8 125 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 LPAR2Q9HBW0 351 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 A0A1W2PNV4 684 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 GRIFINA4D1Z8 144 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 IL24Q13007 206 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 ACTL10Q5JWF8 245 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 OSR2Q8N2R0 312 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 ACY3Q96HD9 319 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 MRGPRX4Q96LA9 322 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 MS4A10Q96PG2 267 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 DNAJC4Q9NNZ3 241 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 PAM16Q9Y3D7 125 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 TCRBV21S2A2A0A5A6 115 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 MDH2P40926 338 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 YPEL5P62699 121 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF92Q03936 586 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 TCF23Q7RTU1 214 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 OR51H1Q8NH63 302 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 LHX4Q969G2 390 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 HS3ST6Q96QI5 342 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 RASL10BQ96S79 203 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 SPIN2AQ99865 258 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 SPIN2BQ9BPZ2 258 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 OR6C3Q9NZP0 311 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 BDP1A6H8Y1 2624 aa11.53□□□□□ -0.56
CCDC88C-201ENST00000331194 KIR2DL5BA0A0G2JN68 375 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 KIR2DL5BA0A0G2JPC4 375 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 SPTY2D1-AS1A0A0U1RR47 76 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 CNN1P51911 297 aaKnown RBP11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 BAXQ07812 192 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 DAZAP2Q15038 168 aaPredicted RBP11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 VHLLQ6RSH7 139 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 HAPLN4Q86UW8 402 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 KIR2DL5AQ8N109 375 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 OR2T10Q8NGZ9 312 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 BORCS8Q96FH0 119 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 PARD6GQ9BYG4 376 aaPredicted RBP11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 PARLQ9H300 379 aa11.52□□□□□ -0.56
CCDC88C-201ENST00000331194 GPR179Q6PRD1 2367 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 A0A0U1RQV5 110 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 LCATP04180 440 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 VDAC1P21796 283 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 BRS3P32247 399 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 TNFSF10P50591 281 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 ZNF41P51814 821 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 TOMM20LQ6UXN7 152 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 ZNF573Q86YE8 665 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 GPR146Q96CH1 333 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 PARD6AQ9NPB6 346 aa11.52□□□□□ -0.57
CCDC88C-201ENST00000331194 HRASP01112 189 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 IGHV4-34P06331 123 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 CEACAM8P31997 349 aaPredicted RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 RPS16P62249 146 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 FAM78BQ5VT40 261 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 CYP2G1PQ6ZSU1 146 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 MRGPRGQ86SM5 289 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 RPP25LQ8N5L8 163 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 SMRP1Q8NCR6 262 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 GJC3Q8NFK1 279 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 OR4F5Q8NH21 305 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 OR1L3Q8NH93 324 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 MBD3L1Q8WWY6 194 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 OR4F4Q96R69 305 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 OR51I2Q9H344 312 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms