RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 Q96M66 194 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 FAM186AA6NE01 2351 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 ZNF735P0CB33 412 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 CT45A10P0DMU9 189 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 UCP3P55916 312 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 OR5I1Q13606 314 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 IL11RAQ14626 422 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 TRAT1Q6PIZ9 186 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 LRP11Q86VZ4 500 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 UCN2Q96RP3 112 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 PHF7Q9BWX1 381 aaPredicted RBP16.8■□□□□ 0.28
USP48-201ENST00000308271 PAM16Q9Y3D7 125 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 IGHV1OR15-9A0A0B4J2B8 117 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 SRSF3P84103 164 aaKnown RBP16.79■□□□□ 0.28
USP48-201ENST00000308271 TRIM61Q5EBN2 209 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 ZBTB34Q8NCN2 500 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 STARD4Q96DR4 205 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 ZNF385AQ96PM9 386 aaKnown RBP16.79■□□□□ 0.28
USP48-201ENST00000308271 GOLT1BQ9Y3E0 138 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 UBE2CO00762 179 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 MPZP25189 248 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 SGMS2Q8NHU3 365 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 LOC285556D6RIA3 1793 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 C5orf67F2Z3F1 127 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 GAMTQ14353 236 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 ZNF506Q5JVG8 444 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 ARTNQ5T4W7 220 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 RNASEKQ6P5S7 137 aaKnown RBP16.79■□□□□ 0.28
USP48-201ENST00000308271 LINC00596Q86U02 117 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 OR5A2Q8NGI9 324 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 RFESDQ8TAC1 157 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 MARS2Q96GW9 593 aaKnown RBP16.79■□□□□ 0.28
USP48-201ENST00000308271 PRR32B1ATL7 298 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 SLC31A2O15432 143 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 STUMQ69YW2 141 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 DDA1Q9BW61 102 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 TMEM167BQ9NRX6 74 aa16.79■□□□□ 0.28
USP48-201ENST00000308271 COL5A1-AS1Q5SY13 56 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 FAM173AQ9BQD7 235 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 PCGF1Q9BSM1 259 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 DEFB127Q9H1M4 99 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 NAGKQ9UJ70 344 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 CCL2P13500 99 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 NDUFB7P17568 137 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 RTBDNQ9BSG5 229 aaPredicted RBP16.78■□□□□ 0.28
USP48-201ENST00000308271 C2CD4DB7Z1M9 353 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 SPEM1Q8N4L4 309 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 ZNF596Q8TC21 504 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 BOD1Q96IK1 185 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 WDR81Q562E7 1941 aa16.78■□□□□ 0.28
USP48-201ENST00000308271 LRRC30A6NM36 301 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 RNPS1Q15287 305 aaKnown RBP16.77■□□□□ 0.28
USP48-201ENST00000308271 SPINK9Q5DT21 86 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 ZNF343Q6P1L6 599 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 GALNT14Q96FL9 552 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 LRFN3Q9BTN0 628 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 PMELP40967 661 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 CPEB3Q8NE35 698 aaKnown RBP16.77■□□□□ 0.28
USP48-201ENST00000308271 OR5D13Q8NGL4 314 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 DYNLRB1Q9NP97 96 aa16.77■□□□□ 0.28
USP48-201ENST00000308271 FAM90A10PA6NDY2 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A18PA6NE21 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A16PA6NEW6 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A20PA6NIJ5 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A8PA6NJQ4 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 SLC22A20A6NK97 555 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A7PA6NKC0 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A22PA8MWA6 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A12PA8MX19 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A5PA8MXJ8 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A23PA8MXZ1 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 J3QR89 54 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A15PP0C7V4 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A13PP0C7W8 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A14PP0C7W9 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FAM90A24PP0C7X0 464 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 FOLR2P14207 255 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 ZNF658BQ4V348 819 aaPredicted RBP16.77■□□□□ 0.27
USP48-201ENST00000308271 WDR74Q6RFH5 385 aaPredicted RBP16.77■□□□□ 0.27
USP48-201ENST00000308271 VN1R17PQ8TDU5 208 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 TMEM74BQ9NUR3 256 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 H0YIZ8 118 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 OR1L6Q8NGR2 347 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 OR1K1Q8NGR3 316 aa16.77■□□□□ 0.27
USP48-201ENST00000308271 PMS2P1A4D2B8 440 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 PAX5Q02548 391 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.76■□□□□ 0.27
USP48-201ENST00000308271 GUSBP11Q6P575 273 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 FBLN5Q9UBX5 448 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 A0A087WV48 116 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 A0A087WWC5 75 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 J3QT63 122 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 ELOBQ15370 118 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 SELENOHQ8IZQ5 122 aaKnown RBP16.76■□□□□ 0.27
USP48-201ENST00000308271 H1FXQ92522 213 aaKnown RBP16.76■□□□□ 0.27
USP48-201ENST00000308271 ZNF552Q9H707 407 aaPredicted RBP16.76■□□□□ 0.27
USP48-201ENST00000308271 YTHDF2Q9Y5A9 579 aaKnown RBP16.76■□□□□ 0.27
USP48-201ENST00000308271 UNC13CQ8NB66 2214 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 LOC102723971A0A1B0GUV8 181 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 RPS23P62266 143 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms