RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 BCL7BQ9BQE9 202 aa10.37□□□□□ -0.75
SS18-202ENST00000269138 CLEC7AQ9BXN2 247 aa10.37□□□□□ -0.75
SS18-202ENST00000269138 RBM38Q9H0Z9 239 aaKnown RBP10.37□□□□□ -0.75
SS18-202ENST00000269138 ESM1Q9NQ30 184 aa10.37□□□□□ -0.75
SS18-202ENST00000269138 CUBNO60494 3623 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 TRAV18A0A075B6X5 111 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 TRBV6-6A0A0A6YYG2 114 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 F2RL2O00254 374 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 SPINT2O43291 252 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 VENTXO95231 258 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 IFNA2P01563 188 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 CD3GP09693 182 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 ZNF182P17025 639 aaPredicted RBP10.36□□□□□ -0.75
SS18-202ENST00000269138 CD34P28906 385 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 LOXL3P58215 753 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 ZNF260Q3ZCT1 412 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 MIDNQ504T8 468 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 DYNAPQ8N1N2 210 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 DYNC2LI1Q8TCX1 351 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 ZNF418Q8TF45 676 aaPredicted RBP10.36□□□□□ -0.75
SS18-202ENST00000269138 ABCG5Q9H222 651 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 RIMS4Q9H426 269 aaPredicted RBP10.36□□□□□ -0.75
SS18-202ENST00000269138 Q9N2K0 584 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 C12orf4Q9NQ89 552 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 KCNIP1Q9NZI2 227 aa10.36□□□□□ -0.75
SS18-202ENST00000269138 A0A087X0M5 115 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 A0A1B0GX30 115 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 A0A1W2PPE3 182 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 TMEM235A6NFC5 223 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 CCDC160A6NGH7 325 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 SDCBPO00560 298 aaPredicted RBP10.35□□□□□ -0.75
SS18-202ENST00000269138 HPGDSO60760 199 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 NOL3O60936 208 aaKnown RBP10.35□□□□□ -0.75
SS18-202ENST00000269138 EIF4EP06730 217 aaKnown RBP10.35□□□□□ -0.75
SS18-202ENST00000269138 PTHLHP12272 177 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 LGALS4P56470 323 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 ARFRP1Q13795 201 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 HMGN3Q15651 99 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 UBE2NLQ5JXB2 153 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 TRAT1Q6PIZ9 186 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 OR10A7Q8NGE5 316 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 OR52L2PQ8NGH6 319 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 MAFIPQ8WZ33 124 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 ZDHHC16Q969W1 377 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 DUX5Q96PT3 197 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 PRDM13Q9H4Q3 707 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 GFOD1Q9NXC2 390 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 ZNF230Q9UIE0 474 aaPredicted RBP10.35□□□□□ -0.75
SS18-202ENST00000269138 PSG11Q9UQ72 335 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 FAM96BQ9Y3D0 163 aa10.35□□□□□ -0.75
SS18-202ENST00000269138 SERPINE3A8MV23 424 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 TCF21O43680 179 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 SCGNO76038 276 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 IGLV1-47P01700 117 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 FCGR3AP08637 254 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 GNG10P50151 68 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 BAMBIQ13145 260 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 GNMTQ14749 295 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 HACD4Q5VWC8 232 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 Q6YL49 198 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 ZDHHC22Q8N966 263 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 OR10V1Q8NGI7 309 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 OR4P4Q8NGL7 312 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 NUDCD2Q8WVJ2 157 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 ACOT12Q8WYK0 555 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 PHF21AQ96BD5 680 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.34□□□□□ -0.75
SS18-202ENST00000269138 DIABLOQ9NR28 239 aa10.34□□□□□ -0.75
SS18-202ENST00000269138 J3QR06 171 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 TOR1AO14656 332 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 HOXA3O43365 443 aaPredicted RBP10.33□□□□□ -0.76
SS18-202ENST00000269138 SSX5O60225 188 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 MELTFP08582 738 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 GSTP1P09211 210 aaKnown RBP10.33□□□□□ -0.76
SS18-202ENST00000269138 FBP1P09467 338 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 SCTP09683 121 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 ELK1P19419 428 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 HILS1P60008 231 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 HLA-DRB3P79483 266 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 MRPS15P82914 257 aaKnown RBP10.33□□□□□ -0.76
SS18-202ENST00000269138 MADCAM1Q13477 382 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 RBMS3Q6XE24 437 aaKnown RBP10.33□□□□□ -0.76
SS18-202ENST00000269138 MOB1BQ7L9L4 216 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 ZNF554Q86TJ5 538 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 OR52M1Q8NGK5 317 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 OR9G1Q8NH87 305 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 S100A16Q96FQ6 103 aaKnown RBP10.33□□□□□ -0.76
SS18-202ENST00000269138 AUNIPQ9H7T9 357 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 OR2S2Q9NQN1 319 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 TNFRSF19Q9NS68 423 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 GNG12Q9UBI6 72 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 HILPDAQ9Y5L2 63 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 IGKV1D-8A0A087WSZ0 117 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 A0A0A6YYH2 397 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 DNAJC9-AS1A6NH13 148 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 A6NJ64 397 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 SLC31A2O15432 143 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 XRCC3O43542 346 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 IGHV4-59P01825 116 aa10.33□□□□□ -0.76
SS18-202ENST00000269138 PPP1CCP36873 323 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms