RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OR52L2PQ8NGH6 319 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 LILRB1Q8NHL6 650 aaPredicted RBP13.79□□□□□ -0.2
USP4-201ENST00000265560 POM121Q96HA1 1249 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 OR10C1Q96KK4 312 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 ARHGAP32A7KAX9 2087 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 MALRD1Q5VYJ5 2156 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 C12orf77C9JDV5 145 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 TNFSF4P23510 183 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 BEX5Q5H9J7 111 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 FAM216BQ8N7L0 139 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 OR10V1Q8NGI7 309 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 SAP30LQ9HAJ7 183 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 DIRAS3O95661 229 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 IFNA2P01563 188 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 OR8U9P0C7N5 309 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 LMO1P25800 156 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 CEACAM6P40199 344 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 FAHD2BQ6P2I3 314 aaPredicted RBP13.79□□□□□ -0.2
USP4-201ENST00000265560 ZNF565Q8N9K5 539 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 OR8U1Q8NH10 309 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 PPP1R1CQ8WVI7 109 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 FAHD2AQ96GK7 314 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 RIMS4Q9H426 269 aaPredicted RBP13.79□□□□□ -0.2
USP4-201ENST00000265560 RHOFQ9HBH0 211 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 ZDHHC8Q9ULC8 765 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 PHF1O43189 567 aaPredicted RBP13.78□□□□□ -0.2
USP4-201ENST00000265560 ZNF737O75373 536 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 LHBP01229 141 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 ACAA1P09110 424 aaPredicted RBP13.78□□□□□ -0.2
USP4-201ENST00000265560 RBMXL1Q96E39 390 aaKnown RBP13.78□□□□□ -0.2
USP4-201ENST00000265560 CNTNAP3BQ96NU0 1288 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 TP53RKQ96S44 253 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 CNTNAP3Q9BZ76 1288 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 TMEM30CPA0ZSE6 113 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 ERVFRD-1P60508 538 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 MST1LQ2TV78 715 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 UTF1Q5T230 341 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 ZNF880Q6PDB4 577 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 RNF115Q9Y4L5 304 aa13.78□□□□□ -0.2
USP4-201ENST00000265560 CRYM-AS1A6NIL9 109 aa13.77□□□□□ -0.2
USP4-201ENST00000265560 CXCL2P19875 107 aa13.77□□□□□ -0.2
USP4-201ENST00000265560 TFF3Q07654 80 aa13.77□□□□□ -0.2
USP4-201ENST00000265560 OR51H1Q8NH63 302 aa13.77□□□□□ -0.2
USP4-201ENST00000265560 ANGPTL6Q8NI99 470 aa13.77□□□□□ -0.2
USP4-201ENST00000265560 POLQO75417 2590 aa13.77□□□□□ -0.2
USP4-201ENST00000265560 TRAV14DV4A0A0A6YYC5 116 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 PPP1CCP36873 323 aaKnown RBP13.77□□□□□ -0.21
USP4-201ENST00000265560 SURF2Q15527 256 aaPredicted RBP13.77□□□□□ -0.21
USP4-201ENST00000265560 FBXL19-AS1Q494R0 122 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 LYZL2Q7Z4W2 148 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 TRBV6-7A0A0A0MS04 114 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 TMEM8BA6NDV4 472 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 TMPRSS2O15393 492 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 HBZP02008 142 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 MDH2P40926 338 aaKnown RBP13.77□□□□□ -0.21
USP4-201ENST00000265560 LINC00205P59089 165 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 OR4A4PQ8NGN8 299 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 LHFPL5Q8TAF8 219 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 ARL11Q969Q4 196 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 BBC3Q96PG8 261 aaPredicted RBP13.77□□□□□ -0.21
USP4-201ENST00000265560 KCNS2Q9ULS6 477 aa13.77□□□□□ -0.21
USP4-201ENST00000265560 DSCAML1Q8TD84 2053 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 DBX1A6NMT0 343 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 IL2RGP31785 369 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 Q6ZS49 121 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 TBC1D26Q86UD7 250 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 PCNPQ8WW12 178 aaKnown RBP13.76□□□□□ -0.21
USP4-201ENST00000265560 NAA60Q9H7X0 242 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 CELSR2Q9HCU4 2923 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 C19orf84I3L1E1 186 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 IRF2P14316 349 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 ZNF16P17020 682 aaPredicted RBP13.76□□□□□ -0.21
USP4-201ENST00000265560 TESK1Q15569 626 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 MUC15Q8N387 334 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 COQ8AQ8NI60 647 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 GLYATL2Q8WU03 294 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 LEAP2Q969E1 77 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 DNTTIP1Q9H147 329 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 MBNL3Q9NUK0 354 aaKnown RBP13.76□□□□□ -0.21
USP4-201ENST00000265560 KCNIP1Q9NZI2 227 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 OR2W1Q9Y3N9 320 aa13.76□□□□□ -0.21
USP4-201ENST00000265560 GLAP06280 429 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 APOBEC3AP31941 199 aaPredicted RBP13.75□□□□□ -0.21
USP4-201ENST00000265560 SLC38A6Q8IZM9 456 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 TRBV6-6A0A0A6YYG2 114 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 TUSC2O75896 110 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 GATA4P43694 442 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 GSG1LQ6UXU4 331 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 H1FOOQ8IZA3 346 aaPredicted RBP13.75□□□□□ -0.21
USP4-201ENST00000265560 SLC7A5P1Q8MH63 180 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 OR10Z1Q8NGY1 313 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 RSRP1Q9BUV0 290 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 OR2S2Q9NQN1 319 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 PCDHB10Q9UN67 800 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 CSMD1Q96PZ7 3565 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 MPPED1O15442 326 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 RPA2P15927 270 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 ZNF808Q8N4W9 903 aaPredicted RBP13.75□□□□□ -0.21
USP4-201ENST00000265560 KCNIP3Q9Y2W7 256 aa13.75□□□□□ -0.21
USP4-201ENST00000265560 VSTM5A8MXK1 200 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms