RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PBDC1Q9BVG4 233 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 TRAPPC2LQ9UL33 140 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 TRBV23-1A0A0A0MS06 115 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 DEGS1O15121 323 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 BMP5P22003 454 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 APLNRP35414 380 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 CLN3Q13286 438 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 FAM58AQ8N1B3 248 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 OR2J1Q9GZK6 312 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 ARV1Q9H2C2 271 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 LYRM2Q9NU23 88 aaPredicted RBP18.14■□□□□ 0.49
TRIM28-201ENST00000253024 LNP1A1A4G5 178 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 H3BQ15 152 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 DNPH1O43598 174 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 CDS2O95674 445 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 RPS23P62266 143 aaKnown RBP18.13■□□□□ 0.49
TRIM28-201ENST00000253024 EIF3IQ13347 325 aaKnown RBP18.13■□□□□ 0.49
TRIM28-201ENST00000253024 C4orf17Q53FE4 359 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 DCAF10Q5QP82 559 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 SPSB3Q6PJ21 355 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 PCSK4Q6UW60 755 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 LYPD6BQ8NI32 183 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 POM121L2Q96KW2 1035 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 DLL3Q9NYJ7 618 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 IL36GQ9NZH8 169 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 MEOX1P50221 254 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 ZNF266Q14584 549 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 SPANXN5Q5MJ07 72 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 C15orf54Q8N8G6 183 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 SPSB4Q96A44 273 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 RAB39BQ96DA2 213 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 UFSP2Q9NUQ7 469 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 B4GALT7Q9UBV7 327 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 ATP23Q9Y6H3 246 aa18.13■□□□□ 0.49
TRIM28-201ENST00000253024 KIAA1324LA8MWY0 1029 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-201ENST00000253024 UBE2KP61086 200 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 RPL23AP62750 156 aaKnown RBP18.12■□□□□ 0.49
TRIM28-201ENST00000253024 PLPPR1Q8TBJ4 325 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 ADGRG4Q8IZF6 3080 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 HEATR1Q9H583 2144 aaKnown RBP18.12■□□□□ 0.49
TRIM28-201ENST00000253024 HEXAP06865 529 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 VDAC1P21796 283 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 MPLP40238 635 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 UCP3P55916 312 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 RAB11AP62491 216 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 COLCA1Q6ZS62 124 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 CCDC54Q8NEL0 328 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 ZNF665Q9H7R5 613 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 WNT9BO14905 357 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 PAX9P55771 341 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 ARL16Q0P5N6 197 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 SRSF6Q13247 344 aaKnown RBP18.12■□□□□ 0.49
TRIM28-201ENST00000253024 NMSQ5H8A3 153 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 RNFT1Q5M7Z0 435 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 KLF2Q9Y5W3 355 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-201ENST00000253024 POLEQ07864 2286 aa18.12■□□□□ 0.49
TRIM28-201ENST00000253024 MT-ND4LP03901 98 aa18.11■□□□□ 0.49
TRIM28-201ENST00000253024 F2RP25116 425 aa18.11■□□□□ 0.49
TRIM28-201ENST00000253024 BEND4Q6ZU67 534 aa18.11■□□□□ 0.49
TRIM28-201ENST00000253024 PIEZO2Q9H5I5 2752 aa18.11■□□□□ 0.49
TRIM28-201ENST00000253024 GUCD1Q96NT3 240 aa18.11■□□□□ 0.49
TRIM28-201ENST00000253024 LINC00587B1AMM8 73 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 AGFG2O95081 481 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 IL18BPO95998 194 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 TDGF1P13385 188 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 ZNF674Q2M3X9 581 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 BTNL3Q6UXE8 466 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 UBALD2Q8IYN6 164 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 RFESDQ8TAC1 157 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 TMEM56Q96MV1 263 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 SPIN2AQ99865 258 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 SPIN2BQ9BPZ2 258 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 ATPIF1Q9UII2 106 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 TMEM56-RWDD3S4R434 201 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 TGIF2-C20orf24A0A0A6YYL0 155 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 IGHV3-43A0A0B4J1X8 118 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 DEFB108AA8MXU0 73 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 IGHV3-43DP0DP04 118 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 ZNF816Q0VGE8 651 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-201ENST00000253024 OR1J1Q8NGS3 322 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 OR5P3Q8WZ94 311 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 PLK3Q9H4B4 646 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 ZNF391Q9UJN7 358 aa18.1■□□□□ 0.49
TRIM28-201ENST00000253024 PCNX1Q96RV3 2341 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 KIR2DS1A0A191URI9 304 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 KRASP01116 189 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 IGKV1-39P01597 117 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 IGKV1D-39P04432 117 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 KIR2DS4P43632 304 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 NDUFA6P56556 154 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 CTAG1AP78358 180 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 DLK1P80370 383 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 KIR2DS1Q14954 304 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 SSX7Q7RTT5 188 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 WDR86Q86TI4 376 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 ZNF429Q86V71 674 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 STRADBQ9C0K7 418 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 SLC25A31Q9H0C2 315 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 WSB1Q9Y6I7 421 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 CD55P08174 381 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms