RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PQLC2LA1A4F0 135 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 SLC25A4P12235 298 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 TNFRSF14Q92956 283 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 NRIP2Q9BQI9 281 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 DLL3Q9NYJ7 618 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 S100A8P05109 93 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 ZNF362Q5T0B9 420 aaPredicted RBP11.71□□□□□ -0.54
LDLR-201ENST00000252444 FAM162BQ5T6X4 162 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 TMEM230Q96A57 120 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 FYTTD1Q96QD9 318 aaKnown RBP11.71□□□□□ -0.54
LDLR-201ENST00000252444 DKK4Q9UBT3 224 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 CRYGSP22914 178 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 GNG10P50151 68 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 ZNF345Q14585 488 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 LSM10Q969L4 123 aaKnown RBP11.71□□□□□ -0.54
LDLR-201ENST00000252444 GSX2Q9BZM3 304 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 TMEM106BQ9NUM4 274 aa11.71□□□□□ -0.54
LDLR-201ENST00000252444 TCF15Q12870 199 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 PIGYQ3MUY2 71 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 ACP7Q6ZNF0 438 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 MMD2Q8IY49 270 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 SPSB4Q96A44 273 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 NIPSNAP3BQ9BS92 247 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 TMPRSS13Q9BYE2 586 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 GNB4Q9HAV0 340 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 CALYQ9NYX4 217 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 ZFP92A6NM28 416 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 C17orf100A8MU93 164 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 ATXN7O15265 892 aaPredicted RBP11.7□□□□□ -0.54
LDLR-201ENST00000252444 MPDU1O75352 247 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 CEACAM4O75871 244 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 TMEM65Q6PI78 240 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 IGFL2Q6UWQ7 119 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 SH2D2AQ9NP31 389 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 SLC2A9Q9NRM0 540 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 DOCK8Q8NF50 2099 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 NCBP2LA6PVI3 153 aaKnown RBP11.7□□□□□ -0.54
LDLR-201ENST00000252444 NPBWR1P48145 328 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 SLC38A11Q08AI6 406 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 LOC105371242A0A075B767 164 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 FGF7P21781 194 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 SLC35B1P78383 322 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 LGALSLQ3ZCW2 172 aaPredicted RBP11.7□□□□□ -0.54
LDLR-201ENST00000252444 THNSL2Q86YJ6 484 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 BATF2Q8N1L9 274 aa11.7□□□□□ -0.54
LDLR-201ENST00000252444 OR5AC1P0C628 307 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 HPSE2Q8WWQ2 592 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 C7orf66A4D0T2 115 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 TNFSF12O43508 249 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 SYNGR2O43760 224 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 FBXO24O75426 580 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 IGHV3-13P01766 116 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 CT45A10P0DMU9 189 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 CST9LP1Q5W188 147 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 GLCCI1Q86VQ1 547 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 CLEC7AQ9BXN2 247 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 MMP24Q9Y5R2 645 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 HBZP02008 142 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 MT-ND4LP03901 98 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 TMEM33P57088 247 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 UBE2G1P62253 170 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 OR2C3Q8N628 320 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 UNC13CQ8NB66 2214 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 PPP1R2P9O14990 202 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 RHOBP62745 196 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 INSL4Q14641 139 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 C11orf91Q3C1V1 193 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 SSX9Q7RTT3 188 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 TMEM217Q8N7C4 229 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 MESP1Q9BRJ9 268 aa11.69□□□□□ -0.54
LDLR-201ENST00000252444 PJVKQ0ZLH3 352 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 ZIC4Q8N9L1 334 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 RPUSD4Q96CM3 377 aaKnown RBP11.68□□□□□ -0.54
LDLR-201ENST00000252444 TMEM165Q9HC07 324 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 CACNG5Q9UF02 275 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 ZNF230Q9UIE0 474 aaPredicted RBP11.68□□□□□ -0.54
LDLR-201ENST00000252444 PINLYPA6NC86 204 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 CCSO14618 274 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 HIST1H1BP16401 226 aaKnown RBP11.68□□□□□ -0.54
LDLR-201ENST00000252444 COX7A1P24310 79 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 SOHLH1Q5JUK2 328 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 OR4F17Q8NGA8 305 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 OR4F5Q8NH21 305 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 OR2T6Q8NHC8 308 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 RNF138Q8WVD3 245 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 OR4F4Q96R69 305 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 BAMBIQ13145 260 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 CLEC18BQ6UXF7 455 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 GAPTQ8N292 157 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 RFLNBQ8N5W9 214 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 HSD17B11Q8NBQ5 300 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 LHX4Q969G2 390 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 FLVCR2Q9UPI3 526 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 LINC00312Q9Y6C7 94 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 GON4LQ3T8J9 2241 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 MFNGO00587 321 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 APOC3P02656 99 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 MPZP25189 248 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 SSTR2P30874 369 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 BSPH1Q075Z2 132 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 250.7 ms