RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CLCF1Q9UBD9 225 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 VDAC3Q9Y277 283 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF257Q9Y2Q1 563 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PXMP4Q9Y6I8 212 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PPIAL4EA0A075B759 164 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ANKRD30BLA7E2S9 258 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 F5H5K5 113 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 J3QRE1 110 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 IFNL4K9M1U5 179 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 LATO43561 262 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 CA2P00918 260 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 TYMSP04818 313 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 CTSBP07858 339 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PPIAL4FP0DN26 164 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SNU13P55769 128 aaKnown RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 UBE2G1P62253 170 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 RPS11P62280 158 aaKnown RBP eCLIP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 RPL23P62829 140 aaKnown RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 OR1Q1Q15612 314 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ASPHD2Q6ICH7 369 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ANKRD31Q8N7Z5 1873 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PFN4Q8NHR9 129 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ST6GALNAC6Q969X2 333 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 GALMQ96C23 342 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SIGLEC12Q96PQ1 595 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 NMNAT3Q96T66 252 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 TAAR2Q9P1P5 351 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF443Q9Y2A4 671 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SCN8AQ9UQD0 1980 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 FAM231BA6NCW3 169 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 K7EP34 96 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 P2RY10O00398 339 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 TAX1BP3O14907 124 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 LILRA1O75019 489 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 VENTXO95231 258 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 POU2F2P09086 479 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 GPR183P32249 361 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 RAE1P78406 368 aaKnown RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 NTHL1P78549 312 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 RTP5Q14D33 572 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PDGFRLQ15198 375 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF260Q3ZCT1 412 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ACSF3Q4G176 576 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 CDCP2Q5VXM1 449 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SLC22A24Q8N4F4 322 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 VSTM2AQ8TAG5 236 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PYGO2Q9BRQ0 406 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 WFDC1Q9HC57 220 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 CES1P1Q9UKY3 287 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ICAM5Q9UMF0 924 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PDE4DIPQ5VU43 2346 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 MYBPHLA2RUH7 354 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SERINC4A6NH21 518 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM250H0YL14 139 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PLPP3O14495 311 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 CDC42EP2O14613 210 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PHF1O43189 567 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF823P16415 610 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 GPR1P46091 355 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 GCSAMLQ5JQS6 135 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 RNASEKQ6P5S7 137 aaKnown RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 NPEPL1Q8NDH3 523 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 DGAT2Q96PD7 388 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 UHRF2Q96PU4 802 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 C5orf66Q9H5L9 145 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 CALHM2Q9HA72 323 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SLC7A10Q9NS82 523 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 FBXL7Q9UJT9 491 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF646O15015 1829 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 TRBV9A0A0B4J1U6 114 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 A4D1N5 150 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PSMB11A5LHX3 300 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 BMPR1BO00238 502 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ATXN7O15265 892 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ETHE1O95571 254 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 LINC00869P0C866 280 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ID1P41134 155 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 DYNLT3P51808 116 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 GGTLC2Q14390 218 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 RPEL1Q2QD12 228 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 PLAC9Q5JTB6 97 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 VAX1Q5SQQ9 334 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 FAM90A2PQ658T7 463 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ZFAND6Q6FIF0 208 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 DNM1P46Q6ZS02 220 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF808Q8N4W9 903 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SLC16A11Q8NCK7 471 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 OR51T1Q8NGJ9 327 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF418Q8TF45 676 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-216ENST00000637968 GFI1Q99684 422 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 WDR76Q9H967 626 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 SERTAD4Q9NUC0 356 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 MMP17Q9ULZ9 603 aa5.01□□□□□ -1.61
SCN1A-216ENST00000637968 A0A1W2PQH9 124 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 PRNPP04156 253 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 GPX1P07203 203 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 CD55P08174 381 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 FUT1P19526 365 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 CBLN1P23435 193 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms