RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 H0YIZ8 118 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 FAM87AP0C7U9 286 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 STARD6P59095 220 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 OR8B2Q96RD0 313 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 IGHV3-43A0A0B4J1X8 118 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 IGHV3-43DP0DP04 118 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 DEFB133Q30KQ1 61 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 DCAF10Q5QP82 559 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 NUDT16L1Q9BRJ7 211 aaKnown RBP4.42□□□□□ -1.7
VPS13D-214ENST00000620676 PRDM13Q9H4Q3 707 aa4.42□□□□□ -1.7
VPS13D-214ENST00000620676 RNF222A6NCQ9 220 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 SPINT2O43291 252 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 LY6G6FQ5SQ64 297 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PRSS57Q6UWY2 283 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 ACACAQ13085 2346 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 CAMTA1Q9Y6Y1 1673 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 IGFBP4P22692 258 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 OR10G3Q8NGC4 313 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 MRGPRFQ96AM1 343 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PDFQ9HBH1 243 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 LIN7CQ9NUP9 197 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 JKAMPQ9P055 326 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 HOXA6P31267 233 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 ECI1P42126 302 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PRAMEF5Q5TYX0 476 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PRAMEF6Q5VXH4 476 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 CPEB1Q9BZB8 566 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 ORM2P19652 201 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 AGAP20933 346 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 MDH2P40926 338 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PRSS41Q7RTY9 318 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PATE1Q8WXA2 126 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 RIF1Q5UIP0 2472 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 UBR1Q8IWV7 1749 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 A0A0G2JK05 382 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 COX7A2P2O60397 106 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PXNP49023 591 aaPredicted RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 MLC1Q15049 377 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 MRGPRGQ86SM5 289 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 OSR2Q8N2R0 312 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 DNAJB12Q9NXW2 375 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 ICAM5Q9UMF0 924 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 EIF4E2O60573 245 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PSG2P11465 335 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 SLC25A30Q5SVS4 291 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 B4GALT7Q9UBV7 327 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 HDGFL3Q9Y3E1 203 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 CT62P0C5K7 136 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 B4GALT1P15291 398 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 IL13RA2Q14627 380 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 CCL4L1Q8NHW4 92 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 IGSF21Q96ID5 467 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 NRN1Q9NPD7 142 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 MARCH5Q9NX47 278 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 CRIM1Q9NZV1 1036 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 RPS4Y1P22090 263 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 CD40P25942 277 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 SLC25A1P53007 311 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 SRSF9Q13242 221 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 DEFB108BQ8NET1 73 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 HIST1H4GQ99525 98 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 POLR3KQ9Y2Y1 108 aaPredicted RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 HEATR1Q9H583 2144 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 A0A0J9YY10 115 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 TSPAN2O60636 221 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 ASPHD1Q5U4P2 390 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 STXBP6Q8NFX7 210 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 OR1B1Q8NGR6 318 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 HS3ST3A1Q9Y663 406 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 ZNF732B4DXR9 585 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 HTR3DQ70Z44 454 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 HOGA1Q86XE5 327 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 SEBOXQ9HB31 216 aaPredicted RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 BTF3P20290 206 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 VN1R2Q8NFZ6 395 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 OR4P4Q8NGL7 312 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 OR52N5Q8NH56 324 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PTRH2Q9Y3E5 179 aaKnown RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 FIGNL2A6NMB9 653 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 H0Y8X5 98 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 VSIG8P0DPA2 414 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 DEFA4P12838 97 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 UBE2V1Q13404 147 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 ANXA2RQ3ZCQ2 193 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 PTCRAQ6ISU1 281 aaPredicted RBP4.41□□□□□ -1.7
VPS13D-214ENST00000620676 TMEM186Q96B77 213 aa4.41□□□□□ -1.7
VPS13D-214ENST00000620676 MT-ATP6P00846 226 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 FOXA3P55318 350 aaPredicted RBP4.4□□□□□ -1.7
VPS13D-214ENST00000620676 ZNF117Q03924 483 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 OR1C1Q15619 314 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 PQLC2Q6ZP29 291 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 AAED1Q7RTV5 226 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 OR6X1Q8NH79 312 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 SFRP2Q96HF1 295 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 UBL7Q96S82 380 aaPredicted RBP4.4□□□□□ -1.7
VPS13D-214ENST00000620676 APOOQ9BUR5 198 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 SLC25A5P05141 298 aaKnown RBP4.4□□□□□ -1.7
VPS13D-214ENST00000620676 SMIM21Q3B7S5 101 aa4.4□□□□□ -1.7
VPS13D-214ENST00000620676 OCIAD2Q56VL3 154 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms