RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PITPNAQ00169 270 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 MIDNQ504T8 468 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 UBE2NLQ5JXB2 153 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 RTN4RL2Q86UN3 420 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 OR52M1Q8NGK5 317 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 OR13A1Q8NGR1 328 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 NDNFQ8TB73 568 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 LHX4Q969G2 390 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 S100A16Q96FQ6 103 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 PECRQ9BY49 303 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 CALYQ9NYX4 217 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 KCNIP1Q9NZI2 227 aa13.56□□□□□ -0.24
SHKBP1-219ENST00000599575 A0A087X0M5 115 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 A0A1B0GX30 115 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 H3BMQ9 156 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 SPINT2O43291 252 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 IFNA2P01563 188 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 EPHA1P21709 976 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 CDK2P24941 298 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 PLA2G7Q13093 441 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 Q3ZCU0 254 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 PLAC9Q5JTB6 97 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 OR11H6Q8NGC7 330 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 MRPL30Q8TCC3 161 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 MS4A7Q9GZW8 240 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 TMEM133Q9H2Q1 129 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 SIRT7Q9NRC8 400 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 ING3Q9NXR8 418 aa13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 CCDC59Q9P031 241 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-219ENST00000599575 A0A0A6YYJ9 748 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 RNASEK-C17orf49H0YIS7 233 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 MFNGO00587 321 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 APOA1P02647 267 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 IGHV4-38-2P0DP08 117 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 HOXB4P17483 251 aaPredicted RBP13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 CD34P28906 385 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 SRSF7Q16629 238 aaKnown RBP eCLIP13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 PNLIPRP3Q17RR3 467 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 C17orf58Q2M2W7 97 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 TUSC1Q2TAM9 212 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 ZNF880Q6PDB4 577 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 SAMD12Q8N8I0 201 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 OR5H6Q8NGV6 325 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 MRGPRDQ8TDS7 321 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 DYRK2Q92630 601 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 CREB3L1Q96BA8 519 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 SLC25A38Q96DW6 304 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 CMSS1Q9BQ75 279 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 RBM38Q9H0Z9 239 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 RSL24D1Q9UHA3 163 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 ARHGAP32A7KAX9 2087 aa13.54□□□□□ -0.24
SHKBP1-219ENST00000599575 C15orf65H3BRN8 121 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 F2RL2O00254 374 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 TPPPO94811 219 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 CD3GP09693 182 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 SPCS2Q15005 226 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 MOGAT2Q3SYC2 334 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 IL17RELQ6ZVW7 336 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 OR4K15Q8NH41 348 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 DYNC2LI1Q8TCX1 351 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 ARL11Q969Q4 196 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 KIRREL1Q96J84 757 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 SUCNR1Q9BXA5 334 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 CLEC7AQ9BXN2 247 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 CHMP1AQ9HD42 196 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 IDI2-AS1Q9NZ38 188 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 AK3Q9UIJ7 227 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 KCNK7Q9Y2U2 307 aa13.53□□□□□ -0.24
SHKBP1-219ENST00000599575 CCDC160A6NGH7 325 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 NPFFO15130 113 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 XRCC3O43542 346 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 DIRAS3O95661 229 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 MELTFP08582 738 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 HTD2P86397 168 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 CDNFQ49AH0 187 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 HACD4Q5VWC8 232 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 STEAP3Q658P3 488 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 ZNF626Q68DY1 528 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 C8orf31Q8N9H6 132 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 ZNF596Q8TC21 504 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 ZNF418Q8TF45 676 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 CCDC107Q8WV48 283 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 DGCR14Q96DF8 476 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 JMJD8Q96S16 334 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 PRDM13Q9H4Q3 707 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 TAF9BQ9HBM6 251 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 COMMD3Q9UBI1 195 aa13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 TBL2Q9Y4P3 447 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-219ENST00000599575 IGHV2-26A0A0B4J1V2 119 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 C12orf77C9JDV5 145 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 GNB3P16520 340 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 RCC1P18754 421 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 DTYMKP23919 212 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 SSTR5P35346 364 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 TALDO1P37837 337 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 KIR2DS4P43632 304 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 PRRX1P54821 245 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 LGALS4P56470 323 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 ARFRP1Q13795 201 aa13.51□□□□□ -0.25
SHKBP1-219ENST00000599575 KIR2DS1Q14954 304 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms