RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 GLIPR1P48060 266 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 KCNJ3P48549 501 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 GNG2P59768 71 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 SEC61A1P61619 476 aaKnown RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 LMO4P61968 165 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 IFITM3Q01628 133 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 PAX5Q02548 391 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 ATXN7L3Q14CW9 347 aaPredicted RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 CR1LQ2VPA4 569 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 RNASE12Q5GAN4 147 aaKnown RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 SLC35E4Q6ICL7 350 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 ZNF880Q6PDB4 577 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 SLC36A1Q7Z2H8 476 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 TRAPPC6BQ86SZ2 158 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 LYSMD2Q8IV50 215 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 OR8H2Q8N162 312 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 Q8N402 240 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 GVQW1Q8N7I0 195 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 TPRX1Q8N7U7 411 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 TMEM185AQ8NFB2 350 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 OR5D13Q8NGL4 314 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 MRPL30Q8TCC3 161 aaKnown RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 NEK7Q8TDX7 302 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 FAM216AQ8WUB2 273 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 C15orf40Q8WUR7 153 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 SMIM4Q8WVI0 70 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 FCAMRQ8WWV6 532 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 CMSS1Q9BQ75 279 aaKnown RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 PIMREGQ9BSJ6 248 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 THAP7Q9BT49 309 aaPredicted RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 DCTN5Q9BTE1 182 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 WDR12Q9GZL7 423 aaKnown RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 NARFLQ9H6Q4 476 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 SCPEP1Q9HB40 452 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 ING3Q9NXR8 418 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 SLC25A10Q9UBX3 287 aaPredicted RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 KLK11Q9UBX7 282 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 MTFP1Q9UDX5 166 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 MIOXQ9UGB7 285 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 ZNF230Q9UIE0 474 aaPredicted RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 ANAPC10Q9UM13 185 aa7.79□□□□□ -1.16
TRIM28-208ENST00000597172 RBMX2Q9Y388 322 aaKnown RBP7.79□□□□□ -1.16
TRIM28-208ENST00000597172 NOTCH3Q9UM47 2321 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 IGKV1D-8A0A087WSZ0 117 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 TRBV6-6A0A0A6YYG2 114 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 IGHV4-61A0A0C4DH41 118 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 NDUFB3O43676 98 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 ORC5O43913 435 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 IGHV2-5P01817 119 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 FCER2P06734 321 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 LPLP06858 475 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 FCGR3AP08637 254 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 NAT1P18440 290 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 USF1P22415 310 aaPredicted RBP7.78□□□□□ -1.16
TRIM28-208ENST00000597172 ERP29P30040 261 aaKnown RBP7.78□□□□□ -1.16
TRIM28-208ENST00000597172 MRPS10P82664 201 aaKnown RBP7.78□□□□□ -1.16
TRIM28-208ENST00000597172 ARFRP1Q13795 201 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 KRBOX4Q5JUW0 171 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 SPICQ8N5J4 248 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 OR4K15Q8NH41 348 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 CLDND2Q8NHS1 167 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 PPP1R35Q8TAP8 253 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 CCDC107Q8WV48 283 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 MAFIPQ8WZ33 124 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 TRIM63Q969Q1 353 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 MSI2Q96DH6 328 aaKnown RBP7.78□□□□□ -1.16
TRIM28-208ENST00000597172 NEIL1Q96FI4 390 aaPredicted RBP7.78□□□□□ -1.16
TRIM28-208ENST00000597172 ST6GALNAC5Q9BVH7 336 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 RIMS4Q9H426 269 aaPredicted RBP7.78□□□□□ -1.16
TRIM28-208ENST00000597172 NCOR1P1Q9H4R4 102 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 KIF25Q9UIL4 384 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 PCDHB10Q9UN67 800 aa7.78□□□□□ -1.16
TRIM28-208ENST00000597172 TMEM30CPA0ZSE6 113 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 RBBP9O75884 186 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 CGB3P0DN86 165 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 CGB7P0DN87 165 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 RPS2P15880 293 aaKnown RBP7.77□□□□□ -1.17
TRIM28-208ENST00000597172 NDUFB7P17568 137 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 RCC1P18754 421 aaPredicted RBP7.77□□□□□ -1.17
TRIM28-208ENST00000597172 DTYMKP23919 212 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 ZFP36P26651 326 aaKnown RBP7.77□□□□□ -1.17
TRIM28-208ENST00000597172 IL2RGP31785 369 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 GDNFP39905 211 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 P2RX3P56373 397 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 EDDM3AQ14507 147 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 SRSF7Q16629 238 aaKnown RBP eCLIP7.77□□□□□ -1.17
TRIM28-208ENST00000597172 LRRC10Q5BKY1 277 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 WDR25Q64LD2 544 aaPredicted RBP7.77□□□□□ -1.17
TRIM28-208ENST00000597172 GDPD3Q7L5L3 318 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 TCF23Q7RTU1 214 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 HOGA1Q86XE5 327 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 OR8B3Q8NGG8 313 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 OR13A1Q8NGR1 328 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 CORO2AQ92828 525 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 SNAPC3Q92966 411 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 OR8B2Q96RD0 313 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 CCDC32Q9BV29 185 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 Q9N2K0 584 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 C12orf4Q9NQ89 552 aa7.77□□□□□ -1.17
TRIM28-208ENST00000597172 C19orf12Q9NSK7 152 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms