RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 FAM90A13PP0C7W8 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A14PP0C7W9 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A24PP0C7X0 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM106CPP0CH98 169 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 IGLL1P15814 213 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 MED21Q13503 144 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 DOC2BQ14184 412 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 Q499Y3 187 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 YIF1BQ5BJH7 314 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM53AQ6NSI3 398 aaPredicted RBP16.27■□□□□ 0.2
SHMT1-209ENST00000582653 DRAM1Q8N682 238 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 CCDC107Q8WV48 283 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 OR14A2Q96R54 314 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 PAK1IP1Q9NWT1 392 aaPredicted RBP16.27■□□□□ 0.2
SHMT1-209ENST00000582653 A0A1W2PPI3 338 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 PF4V1P10720 104 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 MADCAM1Q13477 382 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 HNF4GQ14541 408 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 OR10A7Q8NGE5 316 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 MYDGFQ969H8 173 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 MUL1Q969V5 352 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 C8orf4Q9NR00 106 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 PCDHB16Q9NRJ7 776 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 CKLFQ9UBR5 152 aa16.26■□□□□ 0.19
SHMT1-209ENST00000582653 TRBV5-7A0A0A0MS05 114 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 TMEM30CPA0ZSE6 113 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 C15orf65H3BRN8 121 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 MAS1P04201 325 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 GTF2F2P13984 249 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 GZMHP20718 246 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 CAPGP40121 348 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 HES1Q14469 280 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 MPV17LQ2QL34 196 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 SLC16A12Q6ZSM3 486 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 C8orf59Q8N0T1 100 aaPredicted RBP16.25■□□□□ 0.19
SHMT1-209ENST00000582653 JAGN1Q8N5M9 183 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 OR4X2Q8NGF9 303 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 OR10X1Q8NGY0 326 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 NEK7Q8TDX7 302 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 ARL11Q969Q4 196 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 MRPS28Q9Y2Q9 187 aaKnown RBP16.25■□□□□ 0.19
SHMT1-209ENST00000582653 MOB4Q9Y3A3 225 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 HSPE1-MOB4S4R3N1 261 aa16.25■□□□□ 0.19
SHMT1-209ENST00000582653 EFCAB10A6NFE3 127 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 ZNF780AO75290 641 aaPredicted RBP16.24■□□□□ 0.19
SHMT1-209ENST00000582653 MT-ND4P03905 459 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 FSTP19883 344 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 GLIPR1L1Q6UWM5 242 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 AHSA2Q719I0 299 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 LINC00596Q86U02 117 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 BPIFB6Q8NFQ5 453 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 CYYR1Q96J86 154 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 PSORS1C1Q9UIG5 152 aa16.24■□□□□ 0.19
SHMT1-209ENST00000582653 IGHV3-43A0A0B4J1X8 118 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 SDCBPO00560 298 aaPredicted RBP16.23■□□□□ 0.19
SHMT1-209ENST00000582653 IGHV3-43DP0DP04 118 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 TMEM11P17152 192 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 CELP19835 753 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 REG1BP48304 166 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 RAB7AP51149 207 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 OGFRL1Q5TC84 451 aaPredicted RBP16.23■□□□□ 0.19
SHMT1-209ENST00000582653 ZNF497Q6ZNH5 498 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 STX19Q8N4C7 294 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 BANF2Q9H503 90 aa16.23■□□□□ 0.19
SHMT1-209ENST00000582653 CNOT2Q9NZN8 540 aaKnown RBP16.23■□□□□ 0.19
SHMT1-209ENST00000582653 ANKRD65E5RJM6 399 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 AIPO00170 330 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 IGKV1D-33P01593 117 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 IGKV1-33P01594 117 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 PF4P02776 101 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 VHLP40337 213 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 TAS2R43P59537 309 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 GPR176Q14439 515 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 MOB3BQ86TA1 216 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 OR8H3Q8N146 312 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 C5orf56Q8N8D9 126 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 FBLIM1Q8WUP2 373 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 RCC1LQ96I51 464 aaKnown RBP16.22■□□□□ 0.19
SHMT1-209ENST00000582653 DERL3Q96Q80 235 aa16.22■□□□□ 0.19
SHMT1-209ENST00000582653 IGHV3-72A0A0B4J1Y9 119 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 HSD17B6O14756 317 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 MYL12BO14950 172 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 DUS4LO95620 317 aaKnown RBP16.21■□□□□ 0.19
SHMT1-209ENST00000582653 WNT4P56705 351 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 SLC35A2P78381 396 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 KHDC1LQ5JSQ8 128 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 AWAT2Q6E213 333 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 ZNF329Q86UD4 541 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 LYPD6Q86Y78 171 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 NANOGP1Q8N7R0 232 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 OR52M1Q8NGK5 317 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 OR4K15Q8NH41 348 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 RBMXL1Q96E39 390 aaKnown RBP16.21■□□□□ 0.19
SHMT1-209ENST00000582653 NOL4LQ96MY1 436 aaPredicted RBP16.21■□□□□ 0.19
SHMT1-209ENST00000582653 PLCXD1Q9NUJ7 323 aa16.21■□□□□ 0.19
SHMT1-209ENST00000582653 RCC2Q9P258 522 aaKnown RBP16.21■□□□□ 0.19
SHMT1-209ENST00000582653 IGHV1-3A0A0C4DH29 117 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 MCRIP1C9JLW8 97 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 CCRL2O00421 344 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 CASQ2O14958 399 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms